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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I02732.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 126aa MW: 13535.3 Da PI: 4.7364 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.8 | 1e-11 | 73 | 116 | 3 | 49 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 + GV + + +gr+ +eIrd + ng +r++l +f++ae A a+++a Pahal.I02732.1 73 FIGVQRQP-WGRFTVEIRDSTRNG--ARVWLSTFDSAEAATMAYDQA 116 569*9888.**********44465..*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 14.513 | 72 | 125 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-5 | 72 | 124 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-7 | 73 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-5 | 73 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.2E-12 | 73 | 120 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-16 | 73 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-5 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MEGWLLLEVL VLAQLFGMME DGCWWSTGYC GDEVPTPAVP GTSYGRRRAS AAEVSAVPAA 60 GQVAPGGSSK GAFIGVQRQP WGRFTVEIRD STRNGARVWL STFDSAEAAT MAYDQATLSW 120 MYHLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-15 | 67 | 119 | 9 | 61 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727702 | 1e-52 | KJ727702.1 Zea mays clone pUT5641 AP2-EREBP transcription factor (EREB128) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803964.1 | 1e-24 | ethylene-responsive transcription factor ERF094-like | ||||
TrEMBL | A0A3L6T4H8 | 3e-32 | A0A3L6T4H8_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ba02374.1.p | 3e-32 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-18 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I02732.1 |