PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02315.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 362aa    MW: 39665.1 Da    PI: 7.39
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02315.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.93.2e-1939108271
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                     Wt  e+++Liea+r+++e+   g +  ++W++v +++++ g++rs +qC+++w+nl ++ykk+++ e  +
  Pahal.I02315.1  39 WTLPETMLLIEAKRKVHEERHPGDQVLARWRWVEDYCWRAGCRRSHNQCNDRWDNLMRDYKKVRAYEVAG 108
                     ****************************************************************988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.0023195IPR017877Myb-like domain
SuperFamilySSF466892.14E-63496IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-53497IPR009057Homeodomain-like
PfamPF138373.9E-1337106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEGGSRALLG QTGDEQSRSV AMAGAGALTV ARDYRRGNWT LPETMLLIEA KRKVHEERHP  60
GDQVLARWRW VEDYCWRAGC RRSHNQCNDR WDNLMRDYKK VRAYEVAGAG AGRAPSYWAM  120
GRAERKEKGL PSNLLREIYD AMGEVIERRM SLGGCGGGSG GGAGGTFLGA SSGLLDVPMQ  180
ASPLAQFLPR SLPLEQETRH HGYRVAHFSP ESPDRKRRRP SLDDLRPGIG SSTPPAPGTH  240
VHRQEQGHRH REDDDDHGRD GESSDSERSD EEEEEEVLSG AIGRCAAILS EALESREAAE  300
ERRHREVMAV EERRGRALQA RREAGQQCVA ELAAAVNQLA GSMLALAAAK HKDKGGAAPP  360
K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214218RKRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0836021e-158BT083602.1 Zea mays full-length cDNA clone ZM_BFb0018E14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792444.10.0uncharacterized protein LOC112873645
TrEMBLA0A2S3IK160.0A0A2S3IK16_9POAL; Uncharacterized protein
STRINGPavir.J22454.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.13e-42Trihelix family protein