PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01317.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 970aa    MW: 106090 Da    PI: 5.5982
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01317.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.43.2e-41151228178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +CqvegC adl+ ak+yhrrhkvCe+h+ka++++v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Pahal.I01317.1 151 ACQVEGCGADLTAAKDYHRRHKVCEMHAKASTAVVGNTVQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNRRRRKTRP 228
                     5**************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.8E-34144213IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.624149226IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.19E-39150230IPR004333Transcription factor, SBP-box
PfamPF031104.6E-30152225IPR004333Transcription factor, SBP-box
CDDcd002041.62E-9726856No hitNo description
SMARTSM002480.29751780IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.204.8E-8752855IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.53E-8753857IPR020683Ankyrin repeat-containing domain
SMARTSM00248710797827IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 970 aa     Download sequence    Send to blast
MEAARLGAQS SHLYGSGLGE LDLNRRENRV FGWDLNDWNW DSERFVATPV PTAAANGSGL  60
NSSPSSSEEA EAEVARNGGH RGDTDKRKRV VVIDDDDRED QDMIVNGGRS LSLRIGGSAV  120
GVGVMESSDV NEDDRNGKKI RVQGGSSNGP ACQVEGCGAD LTAAKDYHRR HKVCEMHAKA  180
STAVVGNTVQ RFCQQCSRFH LLQEFDEGKR SCRRRLAGHN RRRRKTRPDI AIGGTASIED  240
KVSNYLLLSL IGICANLNSD SVQDSNSQEL LSTLLKNLGS VAKSLEPKEL CKLLEAYQSL  300
QNGSNAGTSG TANAAEEAAG PSNSKLPFVN GSHRGQASSS VVPVQSNATV VVTPEPASCK  360
LKDFDLNDTC NDMEGFEDGQ EGSPTPAFKA ADSPNCASWM QQDSTQSPPQ TSGNSDSTST  420
QSLSSSNGDA QCRTDKIVFK LFNKVPSDLP PVLRSQILGW LSSSPTDIES YIRPGCIILT  480
VYLRLVESAW RELSDNMSLH LDKLLNSSNG DFWASGLVFV IVRRQLAFMH NGQIMLDRPL  540
APSSHQYCKI LRVRPVAAPY SATINFRVEG FNLLSTSSRV ICSYEGRCIF QEDTDTVADD  600
AEYKDRDIEC LSFCCSIPGT RGRGFIEVED SGFSNGFFPF IIAEKDVCSE VSELESIFES  660
SSNEHAVVDD NARDQSLEFL NELGWLLHRV NRMSKQDETD TPLSAFNMWR FRKLGIFAME  720
REWCAVVEML LDFLFIGLVD VGSRSPEEMV LSENLLHAAV RTKSVKMVRF LLRYKPNKNS  780
KGTAQTYLFR PDALGPLTIT PLHIAAATSD AEDVLDALTD DPGLVGISAW SNARDETGFT  840
PEDYARQRGN DAYLNLVRKK IDKHVGKGHV VLGVPSSMCS VIPDGAKPGD VSLEICTPMS  900
ASVPRCLLCT QQARVYPNSG ARTFLYRPAM LTVMGVAVVC VCVGILLHTF PRVYAAPTFR  960
WELLERGPM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-31145225484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0388520.0BT038852.1 Zea mays full-length cDNA clone ZM_BFb0336G12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793312.10.0squamosa promoter-binding-like protein 6
SwissprotQ75LH60.0SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBLA0A2S3IGN30.0A0A2S3IGN3_9POAL; Uncharacterized protein
STRINGPavir.J01500.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]