PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H01969.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 308aa MW: 33698.5 Da PI: 9.192

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H01969.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.9	6.8e-52	13	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhP+d+el+ +yL++kv g+ ++ ++ + +vd++k+ePwdLp+++ + +ewyfFs rd+kyatg+r+nrat+sgyWkatgkd++v Pahal.H01969.1 13 LPPGFRFHPRDDELIRDYLAPKVCGRAgFSGHRPpMVDVDLNKIEPWDLPRTALVGPREWYFFSLRDRKYATGQRTNRATASGYWKATGKDRAVE 107 79********************99986666666***********87778999********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +g lvg++ktLvfykgrapkg+kt+Wvmheyr+ Pahal.H01969.1 108 H-QGMLVGMRKTLVFYKGRAPKGRKTEWVMHEYRV 141 9.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-61	2	164	IPR003441	NAC domain
PROSITE profile	PS51005	55.714	13	164	IPR003441	NAC domain
Pfam	PF02365	1.4E-27	14	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MSMSFVSMVE AELPPGFRFH PRDDELIRDY LAPKVCGRAG FSGHRPPMVD VDLNKIEPWD 60 LPRTALVGPR EWYFFSLRDR KYATGQRTNR ATASGYWKAT GKDRAVEHQG MLVGMRKTLV 120 FYKGRAPKGR KTEWVMHEYR VEGSHDQSSN FSKEDWVLCK VICKKKSGGG GSKSRSLATD 180 VLGATSTTAS SPPPATLMGI TLAQVQAAMD TTSAGARVAT LDQVYCFTSF KNCGRNKNVM 240 DAAQRCYLPD GVTGNNAKGL PELGSCIDPT DRDKDLLKAL LSDLGDEVVP SLPPEKAASF 300 SSTLMMN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-51	8	167	12	168	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-51	8	167	12	168	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-51	8	167	12	168	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-51	8	167	12	168	NO APICAL MERISTEM PROTEIN
3swm_A	5e-51	8	168	15	172	NAC domain-containing protein 19
3swm_B	5e-51	8	168	15	172	NAC domain-containing protein 19
3swm_C	5e-51	8	168	15	172	NAC domain-containing protein 19
3swm_D	5e-51	8	168	15	172	NAC domain-containing protein 19
3swp_A	5e-51	8	168	15	172	NAC domain-containing protein 19
3swp_B	5e-51	8	168	15	172	NAC domain-containing protein 19
3swp_C	5e-51	8	168	15	172	NAC domain-containing protein 19
3swp_D	5e-51	8	168	15	172	NAC domain-containing protein 19
4dul_A	5e-51	8	167	12	168	NAC domain-containing protein 19
4dul_B	5e-51	8	167	12	168	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828624.1	0.0	NAC domain-containing protein 21/22-like
TrEMBL	A0A2S3IE57	0.0	A0A2S3IE57_9POAL; Uncharacterized protein
STRING	BRADI4G02060.1	1e-129	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10022	31	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.2	1e-75	NAC domain containing protein 1

Link Out ? help Back to Top
Phytozome	Pahal.H01969.1