PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H01190.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

HSF

Protein Properties

Length: 390aa MW: 42595.2 Da PI: 6.5209

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H01190.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	102.1	5.1e-32	82	175	2	102
HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 F+ k+ye++ d++++ ++sw gnsfvv+d++ +a +Lp++Fkh nfaSF+RQLn+YgF+kv+ ++ weF+h sF g+k+ll Pahal.H01190.1 82 FVAKTYEMVADAATDAVVSWApgGAGNSFVVWDPQALAVGILPRFFKHANFASFIRQLNIYGFRKVNPDR---------WEFAHVSFLSGQKHLL 167 9******************55556*************************************999.........************ PP XXXXXXXX CS HSF_DNA-bind 95 ekikrkks 102 ++ikr++ Pahal.H01190.1 168 RNIKRRRA 175 ***975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.2E-49	78	173	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.63E-29	79	173	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.5E-33	79	173	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	6.3E-28	82	173	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.1E-17	82	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.1E-17	122	134	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	123	147	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.1E-17	135	147	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MAASSSSSSS PLGTRPSGGS KPGMTRASGG GLGLGLAVVA MARGAAAVKR EPKPEPWAAE 60 PESGPAVVLP RPVEGPPMPA PFVAKTYEMV ADAATDAVVS WAPGGAGNSF VVWDPQALAV 120 GILPRFFKHA NFASFIRQLN IYGFRKVNPD RWEFAHVSFL SGQKHLLRNI KRRRAPKPQM 180 EAQPANGASV CFGQPKDSSE VERLKRDRAA LRAEVLMLKQ QYISCKSQLV ALEERILNNE 240 RNQKHAISFF AKVLSNPAFL RQVLLNYAVN KELCSTAKRQ RLMENEEQHV GTPLENVKEA 300 ALASEANASA ASSDGGAITK HESMPEWNHQ EMDNIWDDVW DELDAIPGAE MDQEDKAAAR 360 FDVEEFTGRP CGWVDDCTYL VEQMQFVEH*

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MAASSSSSSS PLGTRPSGGS KPGMTRASGG GLGLGLAVVA MARGAAAVKR EPKPEPWAAE  60
PESGPAVVLP RPVEGPPMPA PFVAKTYEMV ADAATDAVVS WAPGGAGNSF VVWDPQALAV  120
GILPRFFKHA NFASFIRQLN IYGFRKVNPD RWEFAHVSFL SGQKHLLRNI KRRRAPKPQM  180
EAQPANGASV CFGQPKDSSE VERLKRDRAA LRAEVLMLKQ QYISCKSQLV ALEERILNNE  240
RNQKHAISFF AKVLSNPAFL RQVLLNYAVN KELCSTAKRQ RLMENEEQHV GTPLENVKEA  300
ALASEANASA ASSDGGAITK HESMPEWNHQ EMDNIWDDVW DELDAIPGAE MDQEDKAAAR  360
FDVEEFTGRP CGWVDDCTYL VEQMQFVEH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	4e-24	75	173	13	120	Heat shock factor protein 1
5hdg_A	4e-24	78	173	7	110	Heat shock factor protein 1
5hdn_A	4e-24	78	173	7	110	Heat shock factor protein 1
5hdn_B	4e-24	78	173	7	110	Heat shock factor protein 1
5hdn_C	4e-24	78	173	7	110	Heat shock factor protein 1
5hdn_D	4e-24	78	173	7	110	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814071.1	0.0	heat stress transcription factor A-6a-like
Swissprot	Q657C0	1e-154	HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBL	A0A2S3HUJ8	0.0	A0A2S3HUJ8_9POAL; Uncharacterized protein
STRING	Pavir.Eb02487.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP308	37	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	3e-72	heat shock transcription factor A2

Link Out ? help Back to Top
Phytozome	Pahal.H01190.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]