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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.H00098.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 560aa MW: 62713 Da PI: 6.6022 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 309.5 | 7.4e-95 | 178 | 550 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++lL++cA+av++ + a++lL +++++asp+gd++qRla++f+eAL+arla+ +++ ++ ++ +n +e l+a++lf ++ + k++++ Pahal.H00098.1 178 RTLLVHCAQAVDD--RRGARELLRQVKQHASPTGDATQRLAHCFAEALEARLAGAGTGRSSLMA------TNRAEFLKAYRLFMATCCFEKVAFM 264 789******9975..899************************************4444443332......34678******************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 aN +I +a++g +r+H++D+++ G+QWp Ll+ La+R++gpp++ iT +++p++g ++++eetg+ L+++A+ +gvpf+f++++a r++++ Pahal.H00098.1 265 FANLTICRAAAGRSRLHVVDYGLHLGFQWPDLLRWLAARDGGPPEVTITFIDHPQPGfrPARRIEETGRSLSNYARDIGVPFKFRAIAAARWDTI 359 ***************************************************************************************999***** PP GRAS 190 eleeL....rvkp.gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 +eeL v+ g +l+Vn+ ++l++l+d+sv ++s +rd+vL +++++P v+++ + + ++sFl+rf eal yysa+fd l+a++pr Pahal.H00098.1 360 GVEELglglGVDDpGAVLVVNSLFKLETLVDDSVVVDSpnPRDRVLGGIRGMRPAVFTHGVVNGFY-GNSFLTRFREALFYYSAVFDLLDATMPR 453 ****9444434437*******************98888779********************99999.678************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371 se+r+++Er +lg+ + nv+aceg++r+ r ++++W+ r ++aG++++pl+ +++ +++ +rk++ + + ++e++g+l++gWk+r L++ S Pahal.H00098.1 454 GSEQRRVLERDVLGPCALNVIACEGRDRTDRFDSYKQWQLRSRRAGLRQLPLDREIVGEVRDEVRKHHyHRDFVIDEDHGWLLQGWKGRILYAHS 548 ********************************************************************9999*********************** PP GRAS 372 aW 373 W Pahal.H00098.1 549 NW 550 ** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 53.678 | 151 | 530 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.6E-92 | 178 | 550 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 560 aa Download sequence Send to blast |
MGEEEDRDGR FSCHEDHPAL LHIQQSLAQI ISSSSSSDNA TTNSDIWYAA IEAAGGADHS 60 CISSTDLLTM AFLRGREEAS KLLPRDDRLV ISPEPDTLCA TNGLRVRLPE TEDAETGRAS 120 KKLMAMAAPA EEMIARMMAS DCELPREEME DLRAAMADEA ATRDARRRRR KQQQVDMRTL 180 LVHCAQAVDD RRGARELLRQ VKQHASPTGD ATQRLAHCFA EALEARLAGA GTGRSSLMAT 240 NRAEFLKAYR LFMATCCFEK VAFMFANLTI CRAAAGRSRL HVVDYGLHLG FQWPDLLRWL 300 AARDGGPPEV TITFIDHPQP GFRPARRIEE TGRSLSNYAR DIGVPFKFRA IAAARWDTIG 360 VEELGLGLGV DDPGAVLVVN SLFKLETLVD DSVVVDSPNP RDRVLGGIRG MRPAVFTHGV 420 VNGFYGNSFL TRFREALFYY SAVFDLLDAT MPRGSEQRRV LERDVLGPCA LNVIACEGRD 480 RTDRFDSYKQ WQLRSRRAGL RQLPLDREIV GEVRDEVRKH HYHRDFVIDE DHGWLLQGWK 540 GRILYAHSNW VADDDHHTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 4e-33 | 164 | 551 | 5 | 378 | Protein SCARECROW |
5b3h_D | 4e-33 | 164 | 551 | 5 | 378 | Protein SCARECROW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 172 | ARRRRRKQQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827775.1 | 0.0 | scarecrow-like protein 34 | ||||
TrEMBL | A0A2T8IAD2 | 0.0 | A0A2T8IAD2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J23608.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29065.1 | 1e-100 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.H00098.1 |