PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G00619.5
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 398aa    MW: 43912.3 Da    PI: 4.809
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G00619.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.48.8e-30511961128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........t 78 
                     lp+G++F+P+d el+ ++L+ k + ++      ++++   i+e+ +i++++P++Lp  +k + ++++fF+k +++y  g+rk+r+          
  Pahal.G00619.5  51 LPAGVKFDPSDLELL-QHLQGKSSLQNsnsralIDEFIPtIAEMeGICYTHPKNLP-GIKMDGSSLHFFHKVSNAYGCGHRKRRKitgnndsvcD 143
                     799************.889998877775566554443444888878**********.6677889********************75666666654 PP

             NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128
                     ++ +W++tg +k++++++g ++g kk+Lv+y+g+++ g+   + +Wvmh+y+l
  Pahal.G00619.5 144 EHIRWHKTGASKPIYDENGFKIGWKKILVLYRGSKRGGSkidRDNWVMHQYHL 196
                     4778***************************99998887444689******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-3436215IPR003441NAC domain
PROSITE profilePS5100528.94151215IPR003441NAC domain
PfamPF023651.2E-1152196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MTGVGLVKRI RNATQLISLR LGELVAEPYI KCPNCECGID TSNVSLVWPE LPAGVKFDPS  60
DLELLQHLQG KSSLQNSNSR ALIDEFIPTI AEMEGICYTH PKNLPGIKMD GSSLHFFHKV  120
SNAYGCGHRK RRKITGNNDS VCDEHIRWHK TGASKPIYDE NGFKIGWKKI LVLYRGSKRG  180
GSKIDRDNWV MHQYHLGADE DEANGELVVS KVFYQLLSKK NDKSEMDDVE LESEPSAAKI  240
DPRTPNSEPS AAKIDPRTPK TDPPQPCLPS NSPCDTEQYT PIQVDQEEEE CGTSIRRVKV  300
EAAECSAWFA ELPPAVVVAD LPASDEPRQL MDAPRVGPEP EAPIPVDGSN TDLFNGLPDL  360
DTTFQCLGTP SDSISLTDIH FGSQDSFGGW PDSFKFY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824945.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X2
RefseqXP_025824946.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X3
RefseqXP_025824947.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X3
RefseqXP_025824948.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X3
RefseqXP_025824949.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X3
TrEMBLA0A2S3I7M80.0A0A2S3I7M8_9POAL; Uncharacterized protein
TrEMBLA0A2T7CWA80.0A0A2T7CWA8_9POAL; Uncharacterized protein
STRINGPavir.Ga01597.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.13e-66NAC family protein