![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.G00619.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 398aa MW: 43912.3 Da PI: 4.809 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.4 | 8.8e-30 | 51 | 196 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........t 78 lp+G++F+P+d el+ ++L+ k + ++ ++++ i+e+ +i++++P++Lp +k + ++++fF+k +++y g+rk+r+ Pahal.G00619.4 51 LPAGVKFDPSDLELL-QHLQGKSSLQNsnsralIDEFIPtIAEMeGICYTHPKNLP-GIKMDGSSLHFFHKVSNAYGCGHRKRRKitgnndsvcD 143 799************.889998877775566554443444888878**********.6677889********************75666666654 PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128 ++ +W++tg +k++++++g ++g kk+Lv+y+g+++ g+ + +Wvmh+y+l Pahal.G00619.4 144 EHIRWHKTGASKPIYDENGFKIGWKKILVLYRGSKRGGSkidRDNWVMHQYHL 196 4778***************************99998887444689******98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-34 | 36 | 215 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.941 | 51 | 215 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-11 | 52 | 196 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 398 aa Download sequence Send to blast |
MTGVGLVKRI RNATQLISLR LGELVAEPYI KCPNCECGID TSNVSLVWPE LPAGVKFDPS 60 DLELLQHLQG KSSLQNSNSR ALIDEFIPTI AEMEGICYTH PKNLPGIKMD GSSLHFFHKV 120 SNAYGCGHRK RRKITGNNDS VCDEHIRWHK TGASKPIYDE NGFKIGWKKI LVLYRGSKRG 180 GSKIDRDNWV MHQYHLGADE DEANGELVVS KVFYQLLSKK NDKSEMDDVE LESEPSAAKI 240 DPRTPNSEPS AAKIDPRTPK TDPPQPCLPS NSPCDTEQYT PIQVDQEEEE CGTSIRRVKV 300 EAAECSAWFA ELPPAVVVAD LPASDEPRQL MDAPRVGPEP EAPIPVDGSN TDLFNGLPDL 360 DTTFQCLGTP SDSISLTDIH FGSQDSFGGW PDSFKFY* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824945.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X2 | ||||
Refseq | XP_025824946.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X3 | ||||
Refseq | XP_025824947.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X3 | ||||
Refseq | XP_025824948.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X3 | ||||
Refseq | XP_025824949.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X3 | ||||
TrEMBL | A0A2S3I7M8 | 0.0 | A0A2S3I7M8_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7CWA8 | 0.0 | A0A2T7CWA8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga01597.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25580.1 | 3e-66 | NAC family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.G00619.4 |