PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G00619.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 404aa    MW: 44673.2 Da    PI: 4.7616
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G00619.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.49.1e-30572021128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........t 78 
                     lp+G++F+P+d el+ ++L+ k + ++      ++++   i+e+ +i++++P++Lp  +k + ++++fF+k +++y  g+rk+r+          
  Pahal.G00619.3  57 LPAGVKFDPSDLELL-QHLQGKSSLQNsnsralIDEFIPtIAEMeGICYTHPKNLP-GIKMDGSSLHFFHKVSNAYGCGHRKRRKitgnndsvcD 149
                     799************.889998877775566554443444888878**********.6677889********************75666666654 PP

             NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128
                     ++ +W++tg +k++++++g ++g kk+Lv+y+g+++ g+   + +Wvmh+y+l
  Pahal.G00619.3 150 EHIRWHKTGASKPIYDENGFKIGWKKILVLYRGSKRGGSkidRDNWVMHQYHL 202
                     4778***************************99998887444689******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-3442221IPR003441NAC domain
PROSITE profilePS5100528.94157221IPR003441NAC domain
PfamPF023651.2E-1158202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MENSWIMTGV GLVKRIRNAT QLISLRLGEL VAEPYIKCPN CECGIDTSNV SLVWPELPAG  60
VKFDPSDLEL LQHLQGKSSL QNSNSRALID EFIPTIAEME GICYTHPKNL PGIKMDGSSL  120
HFFHKVSNAY GCGHRKRRKI TGNNDSVCDE HIRWHKTGAS KPIYDENGFK IGWKKILVLY  180
RGSKRGGSKI DRDNWVMHQY HLGADEDEAN GELVVSKVFY QLLSKKNDKS EMDDVELESE  240
PSAAKIDPRT PNSEPSAAKI DPRTPKTDPP QPCLPSNSPC DTEQYTPIQV DQEEEECGTS  300
IRRVKVEAAE CSAWFAELPP AVVVADLPAS DEPRQLMDAP RVGPEPEAPI PVDGSNTDLF  360
NGLPDLDTTF QCLGTPSDSI SLTDIHFGSQ DSFGGWPDSF KFY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824945.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X2
TrEMBLA0A2S3I7M80.0A0A2S3I7M8_9POAL; Uncharacterized protein
TrEMBLA0A2T7CWA80.0A0A2T7CWA8_9POAL; Uncharacterized protein
STRINGPavir.Ga01597.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-67NAC family protein