PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F03023.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 279aa    MW: 29629.9 Da    PI: 7.8459
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F03023.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.72.2e-1188135354
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                     y+G +  ++ grW+Ae r       + r++lg+f t eeA++a++a+ ++++
  Pahal.F03023.1  88 YRGAY-ERQPGRWAAEFRSH---RLKVRHWLGTFATQEEAKAAYDAFERRFH 135
                     67765.7779******5553...245**********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.8E-787149IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-1187137IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-1387135IPR001471AP2/ERF domain
PfamPF008475.6E-787133IPR001471AP2/ERF domain
PROSITE profilePS5103214.23687145IPR001471AP2/ERF domain
CDDcd000183.38E-1287140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDPRRIRVFF SDPDATDSDS GDSDTCAATK PAGKTEIIIL QCNSSTNTRA KMNPAGCGRP  60
QAIGSSAPAA AGNIRNRAVG SAPTTRRYRG AYERQPGRWA AEFRSHRLKV RHWLGTFATQ  120
EEAKAAYDAF ERRFHSSPRC GLPASSSERG ANAGGVRRAS HSPPDDEKRQ IVLALTTAAT  180
TRMLPPSSAG AMAASVSVPS APCISSSTSA SSPPTLFRDA RRCDDDAPRS LHSIWADEPG  240
DGDLVGLADL AHLPLPQFSD PSMDFDPADL SLFDNGFL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822361.10.0ethylene-responsive transcription factor ERF073-like
TrEMBLA0A270R5R50.0A0A270R5R5_9POAL; Uncharacterized protein
STRINGPavir.Fa01379.1.p1e-151(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140032023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.13e-11ERF family protein