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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F03023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 279aa MW: 29629.9 Da PI: 7.8459 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.7 | 2.2e-11 | 88 | 135 | 3 | 54 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 y+G + ++ grW+Ae r + r++lg+f t eeA++a++a+ ++++ Pahal.F03023.1 88 YRGAY-ERQPGRWAAEFRSH---RLKVRHWLGTFATQEEAKAAYDAFERRFH 135 67765.7779******5553...245**********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.8E-7 | 87 | 149 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-11 | 87 | 137 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-13 | 87 | 135 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.6E-7 | 87 | 133 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.236 | 87 | 145 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.38E-12 | 87 | 140 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MDPRRIRVFF SDPDATDSDS GDSDTCAATK PAGKTEIIIL QCNSSTNTRA KMNPAGCGRP 60 QAIGSSAPAA AGNIRNRAVG SAPTTRRYRG AYERQPGRWA AEFRSHRLKV RHWLGTFATQ 120 EEAKAAYDAF ERRFHSSPRC GLPASSSERG ANAGGVRRAS HSPPDDEKRQ IVLALTTAAT 180 TRMLPPSSAG AMAASVSVPS APCISSSTSA SSPPTLFRDA RRCDDDAPRS LHSIWADEPG 240 DGDLVGLADL AHLPLPQFSD PSMDFDPADL SLFDNGFL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822361.1 | 0.0 | ethylene-responsive transcription factor ERF073-like | ||||
TrEMBL | A0A270R5R5 | 0.0 | A0A270R5R5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fa01379.1.p | 1e-151 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14003 | 20 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28140.1 | 3e-11 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F03023.1 |