PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00952.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 598aa    MW: 64243.6 Da    PI: 7.6516
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00952.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.75.4e-103704071954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+  +++ LAk++gLt +qV++WF N R +
  Pahal.E00952.1 370 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 407
                     554459******************************88 PP
2BELL93.81.6e-30236305372
            BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +e q kk++L+s++eeV+krY+ y++q+qtvi+sFe+vag  +a+p++++Al+++++hF+cLk +i +q+
  Pahal.E00952.1 236 AEQQWKKTRLISMMEEVCKRYRLYYQQVQTVINSFETVAGFSNAAPFAAMALRTMAKHFKCLKGMILSQL 305
                     5899**************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.0E-36166303IPR006563POX domain
PfamPF075261.4E-36171301IPR006563POX domain
PROSITE profilePS5007112.228348411IPR001356Homeobox domain
CDDcd000862.06E-13351412No hitNo description
SMARTSM003897.4E-11351415IPR001356Homeobox domain
SuperFamilySSF466894.71E-17353419IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28354415IPR009057Homeodomain-like
PfamPF059206.3E-19368407IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MSSAAGGYGG GAGSGAEPHC HGHAHGDFLL HHHHAQHVAA QQLYHVPQHS RREKLRFPPD  60
DDSPPHASAS ATQHQHQQHA GAAWPPPPPG FYSYASSSTS SYSPHSPTLA QAQLVAAHGH  120
GLAPPLASQI PTQNFALSLS SSSSNPPPQQ PSRPLGAPAG PFGPFTGYAA VLGRSRFLAP  180
AEKLLEEICD VGGTAPHVDR TASDESLLDA DPMEGLDHDM DGADRAASDA GPISGAEQQW  240
KKTRLISMME EVCKRYRLYY QQVQTVINSF ETVAGFSNAA PFAAMALRTM AKHFKCLKGM  300
ILSQLRNTSK AAAGKEGLSK DIAMFGLASG SAPALQRASS AAAFGQPHNI WRPQRGLPER  360
AVSVLRAWLF EHFLHPYPTD GDKQMLAKQT GLTRNQVSNW FINARVRLWK PMVEEIHNLE  420
MRQVHKHPAL DKSQHAMHHQ TQHSSESSRK PSDPSDSQLG QSSSITRNHS IPASQGFPDE  480
LSQMSHSIQQ GQVTFAYNGL STPQHQHSLT SSQHHQQVGS MSGIGGSGNG GVSLTLGLHQ  540
NNRVCIAEPL PASLPPNLAH RFGLEEVSDA YVMGSFGGQD RHFGKEIGGH LVHDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16357415563Homeobox protein Meis2
3k2a_B1e-16357415563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818525.10.0BEL1-like homeodomain protein 9
TrEMBLA0A2S3HQ780.0A0A2S3HQ78_9POAL; Uncharacterized protein
STRINGPavir.Ea03389.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.12e-64BEL1-like homeodomain 8