PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01492.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 401aa    MW: 42233.8 Da    PI: 5.9468
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01492.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.12.1e-29161219259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D ++WrKYGqK++kgs++pr+YYrC++  +C+++k+ver++ dp ++++tY+g+H h+
  Pahal.D01492.1 161 ADLWAWRKYGQKPIKGSPYPRGYYRCSTDkDCKARKQVERCRADPATLIVTYTGDHSHP 219
                     599***********************9998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-30157221IPR003657WRKY domain
SuperFamilySSF1182902.75E-25159221IPR003657WRKY domain
SMARTSM007742.2E-35160220IPR003657WRKY domain
PROSITE profilePS5081130.825162221IPR003657WRKY domain
PfamPF031062.3E-24162219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MEGDLGWCCS SGSNNWDLHA VVRSACSSGD RGRVTPPPGS NDDSSSWPLQ TPSVSEEFSS  60
GLHPPQPQTD QLLDAAASHP PLADPAVDDL CLQAFFASPK LEAPQPSSPR NEALPQRSKA  120
DGPPGKPRTS GRAGPSRSKR KSKKSHVNKE VTRVPVGGPP ADLWAWRKYG QKPIKGSPYP  180
RGYYRCSTDK DCKARKQVER CRADPATLIV TYTGDHSHPV PLHRNSLAGT TRNKAQAQPV  240
SPYPAKEAPK PAEAAPSASG TDTKSPGSPS VSAGLSPSIP LRSLNLGGQY KDEEDDDAAA  300
PCSRLLLEGT EMEGEEDDVL LYLMPEETAP LGPGNGSGCE DVMLFPKPDE PPPTTSTSRT  360
DGGGGEAAQF MNTGEEKFSI LGLSAWKSAS GAATSSWGLT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-17149221679Disease resistance protein RRS1
5w3x_D2e-17149221679Disease resistance protein RRS1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0686096e-82BT068609.2 Zea mays full-length cDNA clone ZM_BFb0349G13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812935.10.0WRKY transcription factor 22-like
TrEMBLA0A2S3HJD50.0A0A2S3HJD5_9POAL; Uncharacterized protein
STRINGPavir.Da00956.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125622536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-39WRKY family protein