PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04735.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 854aa    MW: 92940 Da    PI: 6.8117
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04735.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.9e-182380457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++t+eq+e+Le+++ ++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  Pahal.C04735.1 23 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 80
                    6789****************************************************97 PP
2START158.17.1e-501723782203
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++ +Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ ++++ vi +g  g+++l+
  Pahal.C04735.1 172 IAEETLAEFMSKATGTAINWVQMVGMKPGPDSVGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRHVDIVHVIPTGngGTIELI 265
                     68999*****************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++al++l+  Rdf+++Ry+  l +g++vi+++S+++ +  p     + ++Rae+lpSg+li+p+++g+s + +v+hvdl++++++++lr+l+
  Pahal.C04735.1 266 YMQTYALTTLAGpRDFWTLRYTSGLDDGSLVICERSLTQSTGGPCgpnVPTFIRAEVLPSGYLIRPCDGGGSMIYIVDHVDLNAKSVPEVLRPLY 360
                     **********999****************************9887777999******************************************** PP

                     HHHHHHHHHHHHHHTXXX CS
           START 186 ksglaegaktwvatlqrq 203
                     +s  +  +k++ a+l++ 
  Pahal.C04735.1 361 ESPKILSQKMTAAALRHI 378
                     *************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.241781IPR001356Homeobox domain
SMARTSM003898.5E-151985IPR001356Homeobox domain
SuperFamilySSF466892.1E-162184IPR009057Homeodomain-like
CDDcd000861.60E-152282No hitNo description
PfamPF000469.7E-162380IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-182480IPR009057Homeodomain-like
CDDcd146862.40E-674113No hitNo description
PROSITE profilePS5084827.299162381IPR002913START domain
Gene3DG3DSA:3.30.530.205.3E-23170357IPR023393START-like domain
SMARTSM002343.8E-40171381IPR002913START domain
SuperFamilySSF559613.43E-36172382No hitNo description
PfamPF018521.1E-47172379IPR002913START domain
PfamPF086703.2E-38710852IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MAAVASRERL SPGAAPQVDT GKYVRYTPEQ VEALERVYSE CPKPSSLRRQ QLIRDCPILS  60
NIEPKQIKVW FQNRRCREKQ RKEASRLQTV NRKLSAMNKL LMEENDRLQK QVSRLVYDNG  120
YMKNQLHSPS VATTDTSCES VVTSSQHYQQ QNPAVPPPPQ RDANNPAGLL AIAEETLAEF  180
MSKATGTAIN WVQMVGMKPG PDSVGIIAVS HNCSGVAARA CGLVSLEPTK VAEILKDRPS  240
WYRDCRHVDI VHVIPTGNGG TIELIYMQTY ALTTLAGPRD FWTLRYTSGL DDGSLVICER  300
SLTQSTGGPC GPNVPTFIRA EVLPSGYLIR PCDGGGSMIY IVDHVDLNAK SVPEVLRPLY  360
ESPKILSQKM TAAALRHIRQ IAHESSGEIP YGAGRQPAVL RTFSQRLSRG FNDAVSGFPD  420
DGWSPLLSSD GPEDITITVN SSPNKLVGSH VSPSPFFSAI GGGIMCAKAS MLLQNVPPAL  480
LVRFLREHRS EWADPGVDAY SAASLRANPY AVPGLRAGGF MGNQVILPLA RTLEHEESLE  540
VIRLEGHGFS HDEVLMSRDM FLLQLCSGVD ESAPGACAQL VFAPIDESFA DDAPLLPSGF  600
RVIPLDDKMD MPSATRTLDL ASALEVGSGA GSRAPSDASG ACTTRSVLTI AFQFSFENHL  660
RESVAAMARQ YVRGVMASVQ RVAMAIAPSR LGSHIQLKHP HPPGSPEALA LATWIGRSYR  720
VHTGTEIRWS DTEGADNPLM PFWKHSDAIL CCSLKSPFTL KFANSAGFDI LETTMVNIQD  780
MPLEAVLDDE GRKSLFTELP KIMQQGWAYL PGSVCRSSMG RQASYEQAVA WKVVGDDGAP  840
QGLALMLANW TFI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0674830.0BT067483.1 Zea mays full-length cDNA clone ZM_BFc0058F09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808876.10.0homeobox-leucine zipper protein HOX33-like
SwissprotA2ZMN90.0HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM960.0HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLA0A2S3HFV40.0A0A2S3HFV4_9POAL; Uncharacterized protein
STRINGSi021201m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]