PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04572.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 543aa    MW: 62906.6 Da    PI: 7.4166
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04572.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.71.1e-105514534127
             NAM  34 ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdk.evlsk..kgel...........vglkktLvfykgra 113
                      +++++ +++Pw+Lp+          f ++  +k++    ++r  t+sgyW+++  d  ++ s+  +  +            g+++tL fy   +
  Pahal.C04572.1  55 QANAGLAEADPWHLPA---------QFVMPV-QKKP---GSSRlWTHSGYWEEKEDDFiAIRSRggG--EgssspssspcyEGVRRTLEFY---E 131
                     4566788889999982.........244444.4444...24555899*****887764145554541..356678889999**********...7 PP

             NAM 114 pkgektdWvmheyr 127
                     ++g+ktdWvmhey+
  Pahal.C04572.1 132 HNGTKTDWVMHEYS 145
                     8999*********7 PP
2NAM27.86.9e-0934139873127
             NAM  73 rknratksgyWkatgk.dkevlsk..kgel.....vglkktLvfykgrapkgektdWvmheyr 127
                       nr+t++g+W++  + dk +  +  +  l      glk+tL f+   + +g+ktdW+m ey+
  Pahal.C04572.1 341 SLNRKTHQGRWEEIKShDKLIAIRigQ--LpvpqyAGLKRTLEFH---HDDGTKTDWIMLEYH 398
                     468999******887725555555440..356666*********9...78899*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.02526165IPR003441NAC domain
SuperFamilySSF1019411.7E-1256165IPR003441NAC domain
PfamPF023651.2E-764145IPR003441NAC domain
PROSITE profilePS5080811.886231291IPR003656Zinc finger, BED-type
SMARTSM006142.4E-7235285IPR003656Zinc finger, BED-type
PROSITE profilePS510059.496283422IPR003441NAC domain
PfamPF023651.1E-7316398IPR003441NAC domain
SuperFamilySSF1019411.44E-11326420IPR003441NAC domain
PROSITE profilePS5080810.367486542IPR003656Zinc finger, BED-type
SMARTSM006141.9E-9486538IPR003656Zinc finger, BED-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MEPDGAAATL RNINDAMEEV RRRSLSYRGW TIKEAMEDMR SGKWERRRIA YRTLQANAGL  60
AEADPWHLPA QFVMPVQKKP GSSRLWTHSG YWEEKEDDFI AIRSRGGGEG SSSPSSSPCY  120
EGVRRTLEFY EHNGTKTDWV MHEYSHLDAN MFLQEDMVLR KVFNKKHTHR VHFILEHLEW  180
IMEAHRETLA KHSEQEALIN YVKKTLFDEV MQSLRESGCG EFPTASSAPD GESDDVWQHF  240
TRINTKDPDV VYAACHRCDR VLRAHSKNGT SHLRRHRKTK TCTCNNNPSS TTEDQESLRE  300
LRANLDLYKH GKMEGRVVDS PDLNTSVDPW DLPTPRYFTS SLNRKTHQGR WEEIKSHDKL  360
IAIRIGQLPV PQYAGLKRTL EFHHDDGTKT DWIMLEYHQV DDYNTRDLLL EGSMVFRKVI  420
QIFKDAVKEL ERMWNGDDEE EERYIGEREE EVKACMSTLL RDCLLGEVGQ SDQSRVGKRK  480
RTGAPEGGSE VWLYFTKIYT MDPDRVYAVC HSCDRGYKGH SKNGTSHLKR HNKTCSSKHR  540
KV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807168.10.0uncharacterized protein LOC112885746
TrEMBLA0A2S3HFB80.0A0A2S3HFB8_9POAL; Uncharacterized protein
STRINGPavir.J39504.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15166411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.12e-06NAC domain containing protein 36