PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04447.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 423aa    MW: 46121.4 Da    PI: 6.0716
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04447.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.13.4e-1015026510128
             NAM  10 tdeelvveyLkkkvegkk.........leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     td+e+v + L+++ e++k         l+  e+ + +++++ +PwdLp++          ++ r+k   +++    +t++g Wk+  ++ + ++ 
  Pahal.C04447.1 150 TDKEMV-RLLCERYEHHKreakeesqsLSQLEASAAAGLVQPDPWDLPRR---------CYAARKKFG-SDE----KTRRGCWKERDSEFTAIRG 229
                     677777.55666655555343333333333346777799********933.........344444432.222....3456999988887666654 PP

             NAM  96 ......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             + vg ++tL f+   + +g+ktdW+mhey++
  Pahal.C04447.1 230 dpwlprALRYVGFRRTLEFH---TDDGTKTDWLMHEYAM 265
                     4665545556**********...78899*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.547141287IPR003441NAC domain
PfamPF023657.7E-9150264IPR003441NAC domain
SuperFamilySSF1019411.83E-14184286IPR003441NAC domain
PROSITE profilePS5080811.109352422IPR003656Zinc finger, BED-type
SMARTSM006141.1E-7352415IPR003656Zinc finger, BED-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MENEPAYSAG GPGHFTTGYQ DFPMCFQESP YGPCNVQDLL LEFNAGLTHL PDPYPAAARD  60
IAGPYPYMAA ADVFGGMDSA PPELIQPPQV NAAGPGPYPA GDTTGPYTAT AGMGVLHMAM  120
ESASGEAIAG AGLAQPDPYS AVDIDLSAAT DKEMVRLLCE RYEHHKREAK EESQSLSQLE  180
ASAAAGLVQP DPWDLPRRCY AARKKFGSDE KTRRGCWKER DSEFTAIRGD PWLPRALRYV  240
GFRRTLEFHT DDGTKTDWLM HEYAMLHHSD GHLFLKEEIV LCNVFNNGKD GVPYPSTNTA  300
NDGEPEGELD GNNLPHNDHC LHLHHDAVVQ SDQAPSSGTK RPRADGPKTR TTGESGVWQH  360
FTKIYIEAPK EAGSKKKDCY SLVYAVCHGC DKVFRASPKN GTSSLRRHAA TCQCKHMHAT  420
SS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808085.10.0uncharacterized protein LOC112886403
TrEMBLA0A2S3HER10.0A0A2S3HER1_9POAL; Uncharacterized protein
STRINGPavir.Ca02464.1.p1e-164(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2264124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.24e-09NAC domain containing protein 1