PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C03309.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 19735.3 Da PI: 8.1898 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.2 | 5.8e-20 | 52 | 101 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+G+r+++ +grW+AeIrdp++ +r++lg++ t+e+Aa+a++ a+++++g+ Pahal.C03309.1 52 YRGIRRRP-WGRWAAEIRDPRK---GARVWLGTYATPEDAARAYDVAAREIRGA 101 9*******.**********954...4*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.44E-22 | 51 | 109 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.7E-14 | 51 | 100 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.79 | 51 | 108 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-31 | 51 | 108 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-34 | 51 | 114 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.62E-26 | 52 | 107 | No hit | No description |
PRINTS | PR00367 | 1.5E-10 | 52 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 74 | 90 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MCGGAIIADF VPAGARRPAS SITGDTASIL SGEEELVKAE ARVPAPGRKT AYRGIRRRPW 60 GRWAAEIRDP RKGARVWLGT YATPEDAARA YDVAAREIRG AKAKLNFPPA VGAGAPAAKR 120 RRRVPAAEES SGSSSYPAAA VMGPPGVGGA ETLRDCMSGL EAFLGLEDAD AAPGDGADVE 180 AWDAVDLMFA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 52 | 114 | 6 | 69 | ATERF1 |
3gcc_A | 3e-21 | 52 | 114 | 6 | 69 | ATERF1 |
5wx9_A | 1e-20 | 52 | 115 | 15 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 123 | KRRRRV |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT064397 | 2e-74 | BT064397.1 Zea mays full-length cDNA clone ZM_BFc0165J07 mRNA, complete cds. | |||
GenBank | BT087391 | 2e-74 | BT087391.1 Zea mays full-length cDNA clone ZM_BFb0059P19 mRNA, complete cds. | |||
GenBank | EU951894 | 2e-74 | EU951894.1 Zea mays clone 1062095 ethylene responsive element binding protein 2 mRNA, complete cds. | |||
GenBank | HQ858761 | 2e-74 | HQ858761.1 Zea mays clone UT1602 AP2-EREBP transcription factor mRNA, partial cds. | |||
GenBank | JX469916 | 2e-74 | JX469916.1 Zea mays subsp. mays clone UT3172 MYB-related transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808872.1 | 1e-129 | ethylene-responsive transcription factor ERF071-like | ||||
TrEMBL | A0A2S3HCV5 | 1e-127 | A0A2S3HCV5_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EEX9 | 1e-127 | A0A2T7EEX9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J05942.1.p | 6e-92 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 8e-34 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C03309.1 |