PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01275.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 530aa    MW: 54935.7 Da    PI: 6.1252
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01275.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.8e-30261319259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed+ v+++tYeg+Hnh+
  Pahal.C01275.1 261 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDKAVLITTYEGTHNHQ 319
                     7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-33246321IPR003657WRKY domain
SuperFamilySSF1182901.06E-27253321IPR003657WRKY domain
PROSITE profilePS5081129.321255321IPR003657WRKY domain
SMARTSM007741.7E-36260320IPR003657WRKY domain
PfamPF031061.5E-26262319IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MDLVPKQEQH KEEEEKEEEK ESMILAEHSN RANFGHGGSG RSEIKEVDFF STGGARRRTD  60
DDDDGDGEDW NREASGAPGR GNTTVNTALD LLTTAAATPV NGGEGTAAGA ASDQKEAATV  120
EGELRQAGEE NRRLRRMLDD LTRSYSALYH QLIQAQQQQQ ASGAANSMLP AATVPAGLQF  180
VDPRMAPAMR AAAAHDGGDR GDSDGGSGSA GEAEHQNNGR SSAQQDGSGT PERDENAERA  240
EAPLRRVRVS VRARSEAPMI SDGCQWRKYG QKMAKGNPCP RAYYRCTMAT GCPVRKQVQR  300
CAEDKAVLIT TYEGTHNHQL PPAAAAMAKT TSAAAAMLLS GPAASRDAGA LFAGHHVAAP  360
APLFQSYPYA SAAMGATLSA SAPFPTITLD LTHPPPAPAA GLLPHRPPAL PAMPFPMYGG  420
FPAAHRPAAA VPPQPTTVSL GMMDARNRSA LETMTAAITS DPNFTTALAA ALSTIIGGGG  480
EAAPRSGAGG NGDGNNGSGG TEPSATAAAA GARETALHAL LQRLHDSRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22248323276WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809809.10.0WRKY transcription factor 6-like isoform X2
TrEMBLA0A2S3H7W00.0A0A2S3H7W0_9POAL; Uncharacterized protein
STRINGPavir.J02788.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-49WRKY family protein