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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B03552.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 25166 Da PI: 4.7443 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.2e-18 | 54 | 105 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkle 54 + ++GVr++ + grWv+e+r+p g + r +lg+f+tae Aa+a++aa++++ Pahal.B03552.1 54 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDTAEAAARAHDAAMLAIA 105 579******************9...6445**********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-13 | 54 | 106 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-28 | 55 | 116 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.087 | 55 | 114 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-20 | 55 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.3E-19 | 55 | 116 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.49E-11 | 56 | 116 | No hit | No description |
PRINTS | PR00367 | 3.8E-5 | 56 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-5 | 80 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MCPIKKEMSA ESSSPCSWAS PSTSSPEQEH HRTVWTAPPK KPAGRTKFRE TRHPVFRGVR 60 RRGNAGRWVC EVRVPGRRGC RLWLGTFDTA EAAARAHDAA MLAIAGPGAC LNFADSAWLL 120 AVPASYASLA EVRHAVAEAV EGFQRREALS VSEDDAASSS APSSPSSVEL DGASTDGEES 180 SPAAEDSAFD LDVFNDMSWD VYYASMAQAM LMEPPSAVPA FGDDAVVGDV PLWSY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803653.1 | 1e-167 | dehydration-responsive element-binding protein 1A-like | ||||
Swissprot | A2Z389 | 1e-100 | DRE1A_ORYSI; Dehydration-responsive element-binding protein 1A | ||||
TrEMBL | A0A2T8KRD1 | 1e-166 | A0A2T8KRD1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J03893.1.p | 1e-124 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 2e-30 | C-repeat/DRE binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B03552.1 |