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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pahal.B03309.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
C2H2 |
| Protein Properties |
Length: 419aa MW: 44866.6 Da PI: 6.8746 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.B03309.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 15.9 | 3.8e-05 | 246 | 265 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++Cp C k+F+r n++ H+
Pahal.B03309.1 246 FSCPVCFKTFNRYNNMQMHM 265
89*****************9 PP
|
| 2 | zf-C2H2 | 11 | 0.0013 | 332 | 352 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C Cgk F k + ++H +++
Pahal.B03309.1 332 CRRCGKAFAVKGDWRTHEKNC 352
*****************9987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 419 aa
Download sequence Send
to blast |
MENLYTSFFK SHQHHHRYYY HPAAPPAPAV TPPAYSSSLP FFAAHLQPPT HTPAAPPSPP 60
LREALPLLSL APAASSRGIT REPGRRGRAA ADSDEDGDEE EEEEEGGPAA SSNNRHHGQQ 120
QRVGGLFADL NAKAAGDPMD VESGAGSSSA AGDVTVALRI GLPTTSAGSA DLIGARRRHQ 180
DGGAEEEDDD EGRNNGENGG GGEEEEEEGE AVAAPLGFPS APIGRLNKGQ YWIPTPSQIL 240
IGPTQFSCPV CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GIQPTAMLRL PCYCCAPGCR 300
NNIDHLRAKP LKDFRTLQTH YKRKHGLKPF LCRRCGKAFA VKGDWRTHEK NCGRLWYCLC 360
GSEFKHKRSL KDHARAFGHG HGFVGGAGAS AGCGDDDDDG AVSDVDHDGG GGAAARSM*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU969661 | 0.0 | EU969661.1 Zea mays clone 333696 zinc finger protein mRNA, complete cds. |
