PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03075.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 225aa    MW: 23582.5 Da    PI: 9.0379
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03075.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.2e-21118166355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+W+AeIrdp+    r +r++lg+f+tae Aa+a++ a+++++g
  Pahal.B03075.1 118 YRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFDTAEAAARAYDSAALEFRG 166
                     9*******.**********82....48*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-34117180IPR001471AP2/ERF domain
PROSITE profilePS5103225.989117174IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22117174IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-32117174IPR001471AP2/ERF domain
CDDcd000182.12E-21118174No hitNo description
PRINTSPR003674.1E-12118129IPR001471AP2/ERF domain
PfamPF008477.6E-15118166IPR001471AP2/ERF domain
PRINTSPR003674.1E-12140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MTKKLTSAMA GKQDFRKAQS DDQGIHGGGK SAAGFGGRLI SHEQEDAIIV AALRHVVSGY  60
STPPPELVTV AGGEACGVCG IDGCLGCDFF GAPSGLVAAA GGGEQQQRPR RRRKRNMYRG  120
VRQRPWGKWA AEIRDPRRAA RVWLGTFDTA EAAARAYDSA ALEFRGPRAK LNFPGAAGAA  180
TRTPSPCGAE TATATTPGEW RLGGADGAGD ELLWEGLQDL MKLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21118174663ATERF1
3gcc_A2e-21118174663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107114RPRRRRKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9644532e-65EU964453.1 Zea mays clone 278992 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803172.11e-140ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ067e-33EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A2T8KQS91e-139A0A2T8KQS9_9POAL; Uncharacterized protein
STRINGSi030856m1e-110(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.15e-27redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]