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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B02917.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 394aa MW: 42010.7 Da PI: 4.6584 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.8e-19 | 128 | 177 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdps+ r++lg++ taeeAa+a++a ++k++g Pahal.B02917.1 128 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 177 69*******.**********965...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.933 | 128 | 185 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.17E-31 | 128 | 186 | No hit | No description |
SuperFamily | SSF54171 | 2.22E-22 | 128 | 187 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.5E-38 | 128 | 191 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-32 | 128 | 187 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.6E-12 | 129 | 177 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 129 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 151 | 167 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MCGGAILSGF IRPSGPAAKQ QQQLLQRQPR LVAADLLWPG SGRKGAPAGD DFEADFREFV 60 RGLGEDDDAD TACGGDEVLE VPPPEPATFA FAAAAKAAPP AVDGVMTPKT VQHDEPTATS 120 AKRNRKNQYR GIRQRPWGKW AAEIRDPSKG VRVWLGTYNT AEEAARAYDA EARKIRGKKA 180 KVNFPDEAPD AQKSILKPTT ANLTKLAPLR KACADEAFNN LSNGDNDLFA MFAFSDSKVL 240 VKPAEGASFL PSVKALVPTK RSAENMLSDQ SSNSYGSSDF GWDDETMASD YTSAFAPNNA 300 VPAYANPGYL QGEAPKRMRN NYGVAVPQGN GASNLAQGMS GFDPEMNYLP LPYVESSSDT 360 SMDSLLQNDA PQDGASSGDL WSLDELLMAA GAF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-20 | 127 | 185 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-19 | 128 | 185 | 5 | 63 | ATERF1 |
3gcc_A | 1e-19 | 128 | 185 | 5 | 63 | ATERF1 |
5wx9_A | 3e-19 | 128 | 187 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 258 | 265 | TKRSAENM |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800946.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A2S3GZY0 | 0.0 | A0A2S3GZY0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J01991.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11200 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.3 | 3e-27 | related to AP2 2 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B02917.1 |