PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B01974.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 266aa    MW: 27964.8 Da    PI: 5.6698
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B01974.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.7e-16107156355
             AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + GVr ++ +g+++AeIrd    + k +r++lg+f+++e Aa a+++a+ + +g
  Pahal.B01974.1 107 FIGVRKRP-WGKFAAEIRDsT--R-KGARVWLGTFDSPEAAALAYDQAAFSVRG 156
                     57******.**********32..2.24**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.654106164IPR001471AP2/ERF domain
SMARTSM003802.8E-31106170IPR001471AP2/ERF domain
PRINTSPR003677.3E-8107118IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-20107166IPR016177DNA-binding domain
PfamPF008476.0E-12107156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-27107165IPR001471AP2/ERF domain
CDDcd000183.98E-16107165No hitNo description
PRINTSPR003677.3E-8130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MEQYASYMYS SSYPDHASSC GGGGGVTGAA LDAGGDDMQR LLNALMLDMA AESESFSDDM  60
EAASSDSSSS ACSSAANDSQ QQQRPQPDGH RTCGEKKSSA LERPATFIGV RKRPWGKFAA  120
EIRDSTRKGA RVWLGTFDSP EAAALAYDQA AFSVRGAAAV LNFPVERVQD SLRALALSSS  180
SASSAAAAAA GSPVLALKSR HSIRKRSPNK NKNLPHQQQR PQQQASAAAA PPQPAAFPGS  240
VVELEDLGAD YLDELLRVSS ELDHW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-241051661374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276838e-71KJ727683.1 Zea mays clone pUT5611 AP2-EREBP transcription factor (EREB59) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802925.10.0ethylene-responsive transcription factor 1B-like
TrEMBLA0A2S3GY610.0A0A2S3GY61_9POAL; Uncharacterized protein
STRINGPavir.Ba02781.1.p1e-106(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-33ethylene response factor 1