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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.B01538.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
ERF |
Protein Properties |
Length: 265aa MW: 27102 Da PI: 9.4244 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.B01538.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 54.9 | 2.1e-17 | 102 | 151 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+ GVr+++ +gr++AeIrd + ng +r++lg+f++ae Aa a+++a+++ +g
Pahal.B01538.1 102 FIGVRRRP-WGRFAAEIRDSTRNG--ARVWLGTFDSAEAAAMAYDQAALSARG 151
57******.**********44465..***********************9998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 265 aa
Download sequence Send
to blast |
METKSTRAPP PFHPPHMEQH GVHGFYLYSD YAAAAATSSS SSSSSSDSLP FGTGCCGDEV 60 PEPAVSGYWR RRADAAEVSA AVPAAAAEAG EVAPGSSSKG AFIGVRRRPW GRFAAEIRDS 120 TRNGARVWLG TFDSAEAAAM AYDQAALSAR GPGAALNFPV ERVQESLRAL ALGGGGASGA 180 GAAASAAGSP VLALKSRHSK RKRRKKSEIA AAAAAAAANG AVAPGRSRSR SRSAAAAAEQ 240 QRFVVELEDL GADYLEELLR ISES*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 199 | 204 | KRKRRK |
2 | 199 | 205 | KRKRRKK |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727702 | 1e-136 | KJ727702.1 Zea mays clone pUT5641 AP2-EREBP transcription factor (EREB128) gene, partial cds. |