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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.B01024.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
ERF |
Protein Properties |
Length: 329aa MW: 34930 Da PI: 6.6736 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.B01024.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 55.4 | 1.5e-17 | 183 | 232 | 4 | 56 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
GVr ++ +g+++AeIrd + ng r+++g+f+t+e Aa a+++a+ +++g+
Pahal.B01024.1 183 IGVRKRP-WGKYAAEIRDSTRNG--ERVWIGTFDTPEAAALAYDQAAYSMRGA 232
6******.**********44465..*************************995 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 329 aa
Download sequence Send
to blast |
MEPNFSICYN GHTVFAAYAH ERRQPLEHVE TLYSLPAAAS YVDGRIDTTY SDTSSAAVFT 60 YAGGYYHHSS TATLAGSSSG DPPSHQLQQL HSGGGIDQFY SHRQDGIGIG MVDMDQFSAL 120 MGAASISTSS SSGAPATYHT PAACWPQPHG VVVPPPSHAL PAVMQPAMVN GSAAEAEAPP 180 PLIGVRKRPW GKYAAEIRDS TRNGERVWIG TFDTPEAAAL AYDQAAYSMR GAAAVLNFPV 240 ERVQESLHAL GLTGGSAAGD SLVLALKRRH CIRKRCPKNK QKAAAGREQT AARTIHGHGK 300 QKQEASCVLE LEDLGADYLE ELLALSDQ*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727883 | 6e-97 | KJ727883.1 Zea mays clone pUT5976 AP2-EREBP transcription factor (EREB166) gene, partial cds. |