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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.B00226.2 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
ERF |
Protein Properties |
Length: 311aa MW: 33064 Da PI: 7.6224 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.B00226.2 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 48.9 | 1.6e-15 | 63 | 112 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
y+GV+++++ grW A+I +s +k +lg+f t eeAa+a++ a+ k++g
Pahal.B00226.2 63 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 112
9***************999754...5************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MEEKAARAYD LAALKYWGPS THINFPLEDY QEELEEMKNM TRQEYVAHLR RKSSGFSRGA 60 SMYRGVTRHH QHGRWQARIG RVSGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD 120 ITRYDVDKIM ASNTLLPGEL ARRKKDDEAP VADGGVTAAA LVQAGNGSAT AADTWKVAAA 180 LAAAPRAAEH GHVHHQHDVL SGAEAFSVLH HLVTAADGGG HHSAGGAQHM PMSSASSLVT 240 SLGNSREASP DRGGGLSMLF SKPPAQQQQA ASKPMSPLMP LGSWASPASA RAAASVSIAH 300 MPVFAAWTDA *
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Functional Description ? help
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Source |
Description |
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT088263 | 0.0 | BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds. |