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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A03805.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 334aa MW: 35681.7 Da PI: 6.8864 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.9e-20 | 164 | 213 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++a+ +l+g Pahal.A03805.1 164 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 213 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.26E-32 | 163 | 223 | No hit | No description |
SMART | SM00380 | 2.3E-37 | 164 | 227 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-32 | 164 | 222 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.117 | 164 | 221 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-22 | 164 | 222 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.6E-11 | 165 | 176 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-13 | 165 | 213 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-11 | 187 | 203 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MAAAIDMYKY YNTSAHQIAA SSSSDQELAK ALEPFITSAS SSSSSSPYHY YSSSSSITQD 60 SYMSTPSYTN FATSPLPTTA ATSSSSFSQL PPLYSSPYAA ASAATGVTGT MGLNQLGPAQ 120 IQQIQAQFMM QQQQRGLHVA FLGPRAQPMK QSGSPPLAPA QSKLYRGVRQ RHWGKWVAEI 180 RLPKNRTRLW LGTFDTAEDA ALAYDKAAFR LRGDMARLNF PALRRGGAHL AGPLHASVDA 240 KLTAICQSLA GSKSGSPDAE SSAASPPDSP KCSASTEGEE ESVSAGSPPS PTQVPPVPEM 300 AKLDFTEAPW DETEAFHLRK YPSWEIDWDS ILS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-22 | 160 | 221 | 1 | 63 | ATERF1 |
3gcc_A | 6e-22 | 160 | 221 | 1 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00026 | PBM | Transfer from AT1G78080 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT088163 | 0.0 | BT088163.1 Zea mays full-length cDNA clone ZM_BFc0039L03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807978.1 | 0.0 | ethylene-responsive transcription factor ERF060-like | ||||
Swissprot | Q8H1E4 | 1e-66 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A2S3GTC0 | 0.0 | A0A2S3GTC0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J03624.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 3e-47 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A03805.1 |
Publications ? help Back to Top | |||
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