PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A01828.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 435aa MW: 47157.8 Da PI: 4.3359

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A01828.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	63.7	5.7e-20	9	146	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikev...diykvePwdLp.kkvkaeekewyfFskrdkkyat..gkrknratksgyWkatgk 88 lppG+rF+Pt +elv +yL +++ g++ + + i+++ ++Pw+L ++ ++++ yfF +++++ g r+ r+ ++Wk g+ Pahal.A01828.1 9 LPPGVRFDPTGDELVEFYLLPRALGRPPAVPGIiIEDAaaaTTSASHPWKLLtRHRRTDDGAAYFFERASSSDDAkvGARQYRS-CGSRWKWVGQ 102 79***********************7776554776632246677*833444455578998877654237888886.4589**9 PP NAM 89 dkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ ++++ + k L + +gr+++g +t Wv+hey++ Pahal.A01828.1 103 RRWPDEAlpprgGEQVSWRKCALNLQEGRRKSG-STGWVLHEYTV 146 776655566775555566677899999999997.9******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-24	4	161	IPR003441	NAC domain
PROSITE profile	PS51005	25.574	9	163	IPR003441	NAC domain
Pfam	PF02365	3.9E-12	10	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MSAAKALGLP PGVRFDPTGD ELVEFYLLPR ALGRPPAVPG IIIEDAAAAT TSASHPWKLL 60 TRHRRTDDGA AYFFERASSS DDAKVGARQY RSCGSRWKWV GQRRWPDEAL PPRGGEQVSW 120 RKCALNLQEG RRKSGSTGWV LHEYTVASPQ CPFPVKLCHV AFTGYGYKRQ RVPDGGEGEA 180 QELEPQAAPP PHKRAAATAS SVITTATLDQ EDLGEVRHRA QDQEQQFLDY GTSSVGDFCG 240 SDAGFSQESS VLDPWCPDAG PSQQEPFALD QELAQNQECF TNQSQEQFVN HEGSSIEAYC 300 ALLLAPDLRS SQEPPAGQSL TEEQQLQLQL AQLLGGINSP RGPPTAPAGG EAAYHEEHIQ 360 TTSDLPLPTD QESCTTEKPD GNMGQDDFFE GWGDLDSFCD TTGVQTDDDE MAAGSPERLP 420 AMVVEVQPVA GAKSE

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MSAAKALGLP PGVRFDPTGD ELVEFYLLPR ALGRPPAVPG IIIEDAAAAT TSASHPWKLL  60
TRHRRTDDGA AYFFERASSS DDAKVGARQY RSCGSRWKWV GQRRWPDEAL PPRGGEQVSW  120
RKCALNLQEG RRKSGSTGWV LHEYTVASPQ CPFPVKLCHV AFTGYGYKRQ RVPDGGEGEA  180
QELEPQAAPP PHKRAAATAS SVITTATLDQ EDLGEVRHRA QDQEQQFLDY GTSSVGDFCG  240
SDAGFSQESS VLDPWCPDAG PSQQEPFALD QELAQNQECF TNQSQEQFVN HEGSSIEAYC  300
ALLLAPDLRS SQEPPAGQSL TEEQQLQLQL AQLLGGINSP RGPPTAPAGG EAAYHEEHIQ  360
TTSDLPLPTD QESCTTEKPD GNMGQDDFFE GWGDLDSFCD TTGVQTDDDE MAAGSPERLP  420
AMVVEVQPVA GAKSE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2T8KVE2	0.0	A0A2T8KVE2_9POAL; Uncharacterized protein
STRING	Si019916m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP802	22	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.1	4e-11	NAC domain containing protein 50

Link Out ? help Back to Top
Phytozome	Pahal.A01828.1