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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
PSME_00055293-RA |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
Family |
NAC |
Protein Properties |
Length: 325aa MW: 37069.2 Da PI: 8.194 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PSME_00055293-RA | genome | PRS | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 97.4 | 2.2e-30 | 5 | 82 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
+e+ewyfF++rd+ky++g r+nra++sgyWkatg dk++l++ ++++vg+kk Lvfy gr pkg kt+W+mheyrl
PSME_00055293-RA 5 GEQEWYFFIPRDRKYPNGARPNRAATSGYWKATGMDKPILTStsgGTQKVGVKKALVFYGGRPPKGIKTNWIMHEYRL 82
679*************************************998888899***************************98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 325 aa
Download sequence Send
to blast |
KATFGEQEWY FFIPRDRKYP NGARPNRAAT SGYWKATGMD KPILTSTSGG TQKVGVKKAL 60 VFYGGRPPKG IKTNWIMHEY RLADSGSMPS NFPNKKGSLR ESIRFNYNWY IDFDDTAVLQ 120 LDYWVLCRIY KKKGHSQRVQ GAERDESPSA DEVMTSLPNI EQQNKLQLPK LVPFSGLLET 180 NDPFIEGLLN DEAMDGNGNI SRLPHQVHSS DLSHNNFSNS NDNNSDCQFE VVPKQEALAV 240 DNENKFNSLK RTLSLAAFGD EEIHSAKRFN NMQNNYSYNV NNNVSSLLNS MQPNQTFQQQ 300 NFLSALSDNQ QNFRLPYIQN MHWSS
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 1e-40 | 1 | 138 | 65 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-40 | 1 | 138 | 65 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-40 | 1 | 138 | 65 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-40 | 1 | 138 | 65 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-40 | 1 | 138 | 68 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-40 | 1 | 138 | 68 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-40 | 1 | 138 | 68 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-40 | 1 | 138 | 68 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-40 | 1 | 138 | 68 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-40 | 1 | 138 | 68 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-40 | 1 | 138 | 68 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-40 | 1 | 138 | 68 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-40 | 1 | 138 | 65 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-40 | 1 | 138 | 65 | 171 | NAC domain-containing protein 19 |