PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051369-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 274aa    MW: 30350.1 Da    PI: 10.238
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051369-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.1e-211968255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr ++ +g+W+AeIrdp     + +r++lg+f+tae+Aa+a+++a+ +l+g
  PSME_00051369-RA 19 RYRGVRKRR-WGKWAAEIRDPM----KgARVWLGTFDTAEQAARAYDEAACRLRG 68
                      8*****887.**********84....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.04E-351877No hitNo description
PfamPF008472.8E-141968IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-221978IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-321977IPR001471AP2/ERF domain
SMARTSM003802.3E-371982IPR001471AP2/ERF domain
PROSITE profilePS5103224.211976IPR001471AP2/ERF domain
PRINTSPR003671.5E-112031IPR001471AP2/ERF domain
PRINTSPR003671.5E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSINKGSDQA AMSCTEPKRY RGVRKRRWGK WAAEIRDPMK GARVWLGTFD TAEQAARAYD  60
EAACRLRGSK AKLNLPDEVR RPDGNSHHLR HTISATESQH FAAARPSNPI TDTSFTTALI  120
SQHFPGFHLY VQLLQNPGLA LLPLIQQHLA MSLPNRPLLQ QPTYSTVLSP AASGLGCQQA  180
NPKQTCSQPN REIAVHSGSN QTLPSSSYKD SSRTFISIQP AQQRSRFSGI GGGFELSQLL  240
YSNVPRSASR EYFQTSQPRR ACLNDLNHPP LSED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-221879163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.13e-24related to AP2 6