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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
PSME_00048910-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family |
NAC |
| Protein Properties |
Length: 115aa MW: 12812.6 Da PI: 10.7162 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PSME_00048910-RA | genome | PRS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 77.9 | 2.3e-24 | 2 | 74 | 59 | 128 |
NAM 59 yfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
fF ++ +++++g r+nr +ksgyWkatg+dk++l++ ++++vg+kk vfy gr pkg kt+W+mheyrl
PSME_00048910-RA 2 VFFQPKGQENPNGARPNRDAKSGYWKATGTDKPILTStsgGTQKVGVKKAPVFYGGRPPKGIKTNWIMHEYRL 74
59*********************************998888899***************************98 PP
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-35 | 3 | 110 | 75 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-35 | 3 | 110 | 75 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-35 | 3 | 110 | 75 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-35 | 3 | 110 | 75 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-35 | 3 | 110 | 78 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 1e-35 | 3 | 110 | 78 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 1e-35 | 3 | 110 | 78 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 1e-35 | 3 | 110 | 78 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 1e-35 | 3 | 110 | 78 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 1e-35 | 3 | 110 | 78 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 1e-35 | 3 | 110 | 78 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 1e-35 | 3 | 110 | 78 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 1e-35 | 3 | 110 | 75 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 1e-35 | 3 | 110 | 75 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
