PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00047426-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 364aa    MW: 40936.7 Da    PI: 4.9917
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00047426-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.6e-21186246257
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       r+R+t+t+ ql++Le+ F + n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  PSME_00047426-RA 186 RQRWTPTQMQLQILENIFDQgNGTPSKQKIKEITTELtqhgQISETNVYNWFQNRRARTKR 246
                       89*****************99**************************************97 PP
2Wus_type_Homeobox98.94e-32185248265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPt+ Q++iLe+++++G  tP+k++i++it+eL+++G+i+++NV++WFQNr+aR ++kq
   PSME_00047426-RA 185 ARQRWTPTQMQLQILENIFDQGNGTPSKQKIKEITTELTQHGQISETNVYNWFQNRRARTKRKQ 248
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-17181251IPR009057Homeodomain-like
PROSITE profilePS5007115.273182247IPR001356Homeobox domain
SuperFamilySSF466894.28E-18184250IPR009057Homeodomain-like
SMARTSM003897.9E-12184251IPR001356Homeobox domain
CDDcd000862.60E-13186248No hitNo description
PfamPF000461.0E-18186246IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MWEQSTTSTS MDAQTRVQPD EIQGMVQVVS EQSASADANV TISAGGSFDT FQTDGVLLSQ  60
PILYSRTHGQ VMTDDQMEIL RRQISVYATI CQQLVEMHKA IVAQQSALPG NSLGTFQKIA  120
LETEQKTQTS VDTICVEMDI AQGHPDATLI ESGENSYMQT LYWFRLGQPI PYDSMMTITG  180
HKMTARQRWT PTQMQLQILE NIFDQGNGTP SKQKIKEITT ELTQHGQISE TNVYNWFQNR  240
RARTKRKQQL GLSNNGESEV ETDLESPKEK KAKMDHNPIR DTPVARQTDM SFQCSDQHHF  300
ESQQHGSAVA FRSHIDSKPV MSFSRFPSFE DGLTAARNGQ LIGVDEPVDS FNLVNDGESY  360
PMLR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239247RRARTKRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2I6ECC70.0A0A2I6ECC7_PINTA; WOXG protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.17e-51WUSCHEL related homeobox 13