PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00035305-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 359aa    MW: 40700.1 Da    PI: 9.469
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00035305-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.6e-1562110148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+W++eEd +l++++ ++G+g +W + +++ g++R++k+c++rw++yl
  PSME_00035305-RA  62 KGPWSPEEDCKLKEYIDKFGTGgNWIALPKKAGLKRCGKSCRLRWLNYL 110
                       79*********************************************97 PP
2Myb_DNA-binding39.11.8e-12119158445
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       +++eEd ++  +   +G++ W+ Ia+ ++ gRt++++k++w+
  PSME_00035305-RA 119 FSEEEDNIICSLYISMGSR-WSIIAAQLP-GRTDNDIKNHWN 158
                       8******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.70757110IPR017930Myb domain
SuperFamilySSF466898.17E-2759157IPR009057Homeodomain-like
SMARTSM007177.0E-1261112IPR001005SANT/Myb domain
PfamPF002493.9E-1462110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-2363117IPR009057Homeodomain-like
CDDcd001679.11E-964110No hitNo description
PROSITE profilePS5129421.186111165IPR017930Myb domain
SMARTSM007177.4E-11115163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-21118165IPR009057Homeodomain-like
PfamPF002491.1E-10118158IPR001005SANT/Myb domain
CDDcd001672.39E-8119158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MPCTGNRKTG VYNWKVSDQL KPKGFERFQY LIWYWKPFKA SSRQYSEVMG RTPCCDKANV  60
KKGPWSPEED CKLKEYIDKF GTGGNWIALP KKAGLKRCGK SCRLRWLNYL RPNIKIGGFS  120
EEEDNIICSL YISMGSRWSI IAAQLPGRTD NDIKNHWNLR LKKKLLGKHK NHQVCPLAAE  180
KQESKDMQSY ATSQVCTSPN IYEPQQQHGG VNHHMNTNMN FPYSNYGPGI ISQLSEQNCG  240
STITESSSSL GPATFQLNPQ QVQFDQEVFA NFSPTKLLQR PEGILVDYAS KNNLTMVSTN  300
SPIQASSCIN SPQIEHSTAH IQYKSDAASQ NSYETSATPV LIKEKRAIMF VDQSTYNRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-25621657108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021675884.17e-80transcription factor MYB36
TrEMBLD5ABB61e-139D5ABB6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-71myb domain protein 36