PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

PSME_00031990-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 446aa MW: 49665.9 Da PI: 6.272

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00031990-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.7	1.3e-08	19	41	23	46
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W++Ia ++ gRt++++k++w++ PSME_00031990-RA 19 RWARIATQLP-GRTDNEIKNHWNS 41 4*******.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.251	1	47	IPR017930	Myb domain
SuperFamily	SSF46689	3.74E-8	16	50	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.1E-11	18	48	IPR009057	Homeodomain-like
CDD	cd00167	1.85E-5	19	40	No hit	No description
Pfam	PF00249	1.9E-6	19	42	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MMYSILSIPI TRRLMHSYRW ARIATQLPGR TDNEIKNHWN SCLKKRLKLK HHPSSSTINT 60 KSNVASKSNN TNSLSAAAAH AQDDFTFKSS NSAKSAKQCF DTIPDICRPP YSNTSFNVAT 120 TQENQLCGPA ILELKPEHVQ DQHEDQYYSI PDPTINQQIS YSHLWMQNDT SSHSSENFSS 180 HAAFIYSPTL QAQGLHNHDK TVKPRTCNQL IIESCRTTVP SHETPRSSDY SLVSTGRIAI 240 PALVESESWE EKVENDENNI MIDYSNSSST TNPYSNSTGH CSDHVIDPEP YTTHELGMSI 300 LEDYEALYEN TAHKLFSPLM NSRSQFSAPA IRLPTGQFNH FQADCCKDSL NLRYDINLGA 360 PTYIDINSLH TINQLPQIDG GGGGLGDCSR IPSDANTIPG TIIGGSTGQL QTEFKRGAGH 420 VTVWAHDHLY NINPADPCDL DQIYFS

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MMYSILSIPI TRRLMHSYRW ARIATQLPGR TDNEIKNHWN SCLKKRLKLK HHPSSSTINT  60
KSNVASKSNN TNSLSAAAAH AQDDFTFKSS NSAKSAKQCF DTIPDICRPP YSNTSFNVAT  120
TQENQLCGPA ILELKPEHVQ DQHEDQYYSI PDPTINQQIS YSHLWMQNDT SSHSSENFSS  180
HAAFIYSPTL QAQGLHNHDK TVKPRTCNQL IIESCRTTVP SHETPRSSDY SLVSTGRIAI  240
PALVESESWE EKVENDENNI MIDYSNSSST TNPYSNSTGH CSDHVIDPEP YTTHELGMSI  300
LEDYEALYEN TAHKLFSPLM NSRSQFSAPA IRLPTGQFNH FQADCCKDSL NLRYDINLGA  360
PTYIDINSLH TINQLPQIDG GGGGLGDCSR IPSDANTIPG TIIGGSTGQL QTEFKRGAGH  420
VTVWAHDHLY NINPADPCDL DQIYFS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.3	2e-11	myb domain protein 55