 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PSME_00027152-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
| Family |
NAC |
| Protein Properties |
Length: 208aa MW: 23903.3 Da PI: 5.1786 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PSME_00027152-RA | genome | PRS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 57.2 | 5.9e-18 | 21 | 100 | 28 | 109 |
NAM 28 leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy 109
+l+++i+++d+y+++Pw+Lp ++ +e++w+fF++r +++ r+nr+t sgyWkatg+d++v ++ k Lv+
PSME_00027152-RA 21 QSLHRIIPTLDLYRYDPWELPDLANVGERQWFFFVPRYHTK--FARPNRMTVSGYWKATGSDRAVRNELLLSASKKMELVLC 100
456678***************8788899********98765..57********************99654455555566665 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 208 aa
Download sequence Send
to blast |
MKVSDSIPRK RSCWASISRK QSLHRIIPTL DLYRYDPWEL PDLANVGERQ WFFFVPRYHT 60
KFARPNRMTV SGYWKATGSD RAVRNELLLS ASKKMELVLC RIYRKAVTQK SMEQLVKHDD 120
LEREKPVVTE MSIEQGFADE DDKEEPVISG DEGKSDSILD TVICRSNPLT DANVFPLHLG 180
IGQTEDEASI FDDLIPIICC EEIIQIPS
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-15 | 25 | 86 | 47 | 110 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-15 | 25 | 86 | 47 | 110 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-15 | 25 | 86 | 47 | 110 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-15 | 25 | 86 | 47 | 110 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-15 | 25 | 86 | 47 | 110 | NAC domain-containing protein 19 |
| 4dul_B | 1e-15 | 25 | 86 | 47 | 110 | NAC domain-containing protein 19 |
| Search in ModeBase |
