PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026454-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 271aa    MW: 30271.7 Da    PI: 6.8809
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026454-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.74.1e-1414884128
               NAM  84 katgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       katg+dk++l++   ++++vg+kk Lvfy gr  kg kt+W+mhey l
  PSME_00026454-RA   1 KATGTDKPILTStsgGTQKVGVKKALVFYGGRPAKGIKTNWIMHEYCL 48 
                       79********998888899***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-18179IPR003441NAC domain
PROSITE profilePS5100524.386178IPR003441NAC domain
PfamPF023652.4E-51548IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
KATGTDKPIL TSTSGGTQKV GVKKALVFYG GRPAKGIKTN WIMHEYCLAD SGARPSSFPN  60
KKGSLRLDDW VLCRIYKKNG HSQRVQGAKR DESPSADEVM TSLPNIEQQN KLQLPKLGPF  120
SGLLETDDPF IEGLLNDEAM DGNGNISILP HQVHSSDLSH NNFSNSNDNN SDCQFEVVPK  180
QEALAVDNEN KFNSLKRTLS LAAFGDEEIH SAKRFNEMQN NYSYNVNNNV SALLNSMQPN  240
QTFQQQNFLS ALSDSQQNFR FPYIQNMHWI S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-21184102174NAC domain-containing protein 19
3swm_B1e-21184102174NAC domain-containing protein 19
3swm_C1e-21184102174NAC domain-containing protein 19
3swm_D1e-21184102174NAC domain-containing protein 19
3swp_A1e-21184102174NAC domain-containing protein 19
3swp_B1e-21184102174NAC domain-containing protein 19
3swp_C1e-21184102174NAC domain-containing protein 19
3swp_D1e-21184102174NAC domain-containing protein 19
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1111671e-168BT111167.1 Picea glauca clone GQ03233_M04 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-30NAC domain containing protein 2