 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
PSME_00023817-RA |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
Family |
ERF |
Protein Properties |
Length: 463aa MW: 52180 Da PI: 4.7124 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PSME_00023817-RA | genome | PRS | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 55.7 | 1.2e-17 | 84 | 134 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
+ y+GVr++ +g+WvAeIr+p + r r +lg+f +ae+Aa a+++a++ ++g
PSME_00023817-RA 84 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFSSAEDAALAYDQAARVMYG 134
56*****999.**********8...3.35**********************98876 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009737 | Biological Process | response to abscisic acid |
GO:0010286 | Biological Process | heat acclimation |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 463 aa
Download sequence Send
to blast |
MSSSSFRINT VKDKHVATEP QRRRKVRSRN HGCTTVVETL AKWQELNSQV ESSKDGAKRL 60 RKAPAKGSKK GCMKGKGGPD NGRCNYRGVR QRTWGKWVAE IREPNRGSRL WLGTFSSAED 120 AALAYDQAAR VMYGSCARLN LPDIIRNGGG IAETDQRYGL EICLDVEDAK SDCPFKAEKN 180 AIVPDSALDL PVKSDTKECT LLHRLVPKDE PQDADGRNTF DSSQTTSSRF KDEPQGELPS 240 ATVSRGLSNS EVQPMSIKPE PNESTEPLDS FQDIQLQDLD EMFDPEELLK MMNVNENKGE 300 LSEADTQMFN SLCYNSWPQE ELTDEVGLPS CVSPPSPTLQ YLQFQSLDDR LLGNSLLDEG 360 EQLRLDDRNF KDLGQLQQFN LDSFQQSENQ PVKHYVRSDD KALNAKVLDD GHFASFPYPY 420 NNQGYQSVDM RTSQVLCPES MLTGDLQEMQ DRRIFEDIYQ GYV
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1gcc_A | 3e-19 | 85 | 142 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-19 | 85 | 148 | 5 | 69 | ATERF1 |
3gcc_A | 4e-19 | 85 | 148 | 5 | 69 | ATERF1 |