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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
PSME_00022169-RA |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family |
NAC |
Protein Properties |
Length: 392aa MW: 44063 Da PI: 5.0141 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PSME_00022169-RA | genome | PRS | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 108.9 | 5.8e-34 | 13 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85
lp+G++F+P+d+el+ +L++kv + ++++ +ke +i++++P++Lp vk++ + ++fF++++k+y+tg+rk+r++++ +W++
PSME_00022169-RA 13 LPAGVKFDPSDQELM-GHLAAKVGVGNskphplIDEFIPtLKEDdGICYTHPEKLP-GVKQDGSVCHFFHRTAKAYHTGNRKRRKIQEDRWHK 103
799************.789999876665676553333333555546**********.777888999*************************** PP
NAM 86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
tgk+++v++ +g + g kk+Lv+y +g+ + ekt+Wvmh+y+l
PSME_00022169-RA 104 TGKTRPVVE-NGIQRGWKKILVLYmsTGKGKMFEKTNWVMHQYHL 147
*********.99************7768888899*********98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0000077 | Biological Process | DNA damage checkpoint |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010332 | Biological Process | response to gamma radiation |
GO:0040020 | Biological Process | regulation of meiotic nuclear division |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 392 aa
Download sequence Send
to blast |
MEKSEVAQEW PGLPAGVKFD PSDQELMGHL AAKVGVGNSK PHPLIDEFIP TLKEDDGICY 60 THPEKLPGVK QDGSVCHFFH RTAKAYHTGN RKRRKIQEDR WHKTGKTRPV VENGIQRGWK 120 KILVLYMSTG KGKMFEKTNW VMHQYHLGTE EDENDGEFVV SKIFYQQQHK QIDKNEEPQE 180 NDVPRETEFT SLVPIPDPLT PVTSTPELFR HAKSQADLAT AKEGQLDCMD SPGQVAGFHV 240 ASFEGNVSAN YLTCQGVNDQ TNYDSLQGVR DHSNVNMDDS PWQGLNCQGN ISLDDSTSLA 300 RESQLRVDSQ QLLDDFLHCA ETVQNPSPQN LILDPVEHGR IKAKELDKAV NACNAIPCLD 360 NIELDTPPDI ENIELNFNSQ ESLSAWTRDK AH
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3ulx_A | 2e-12 | 13 | 147 | 15 | 140 | Stress-induced transcription factor NAC1 |