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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
PSME_00017701-RA |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family |
M-type_MADS |
| Protein Properties |
Length: 322aa MW: 36113.4 Da PI: 9.6471 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PSME_00017701-RA | genome | PRS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 58.3 | 9.6e-19 | 9 | 43 | 1 | 35 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaev 35
krien + rqvtfskRrn +lKKA+ELSvLCda++
PSME_00017701-RA 9 KRIENATSRQVTFSKRRNRLLKKAYELSVLCDAKA 43
79******************************985 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 322 aa
Download sequence Send
to blast |
MVRGKTLMKR IENATSRQVT FSKRRNRLLK KAYELSVLCD AKAQPRRVRG PNLAHQLTPS 60
SLVFRPDAVL MLLRKAYKDN HLGHLCRSAP VADYSSLFGG EFKLSEEDAS DISSLNILDI 120
AALEEALLHI LYACASQLVG TIVAGTINLC ISWWMPTGIE NICDVDSLPP DSPWMCPKDR 180
VAFDASVIWG LVGPKHLFGP LGPYKSLVWL FLVGALLPGI VCILSKLFHK AEWLKLINIP 240
VILGGFSSMP PATPVNIGTW IIIGTIFNYF IFRLRRWWWQ RYNYVLSASM DAGTTFMGVL 300
LYFSLGSENK GLKWWGTKID QP
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| Functional Description ? help
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| Source |
Description |
| UniProt | May be involved in the translocation of tetra- and pentapeptides across the cellular membrane in an energy-dependent manner. Acts also as a metal transporter that could be a component of the copper transport machinery. Essential for early embryo development. {ECO:0000269|PubMed:11788749, ECO:0000269|PubMed:12417702, ECO:0000269|PubMed:13129917}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Highly induced by iron, copper and manganese deficiencies. {ECO:0000269|PubMed:13129917}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ060510 | 1e-118 | FJ060510.2 Pinus taeda isolate 1581 anonymous locus 0_16808_01 genomic sequence. |
| GenBank | FJ060513 | 1e-118 | FJ060513.2 Pinus taeda isolate 1592 anonymous locus 0_16808_01 genomic sequence. |
| GenBank | FJ060514 | 1e-118 | FJ060514.2 Pinus taeda isolate 1598 anonymous locus 0_16808_01 genomic sequence. |
| GenBank | FJ060515 | 1e-118 | FJ060515.2 Pinus taeda isolate 1584 anonymous locus 0_16808_01 genomic sequence. |
| GenBank | FJ060517 | 1e-118 | FJ060517.2 Pinus taeda isolate 1596 anonymous locus 0_16808_01 genomic sequence. |
| GenBank | FJ060520 | 1e-118 | FJ060520.2 Pinus taeda isolate 1587 anonymous locus 0_16808_01 genomic sequence. |
| GenBank | FJ060521 | 1e-118 | FJ060521.2 Pinus taeda isolate 1590 anonymous locus 0_16808_01 genomic sequence. |
| GenBank | FJ060522 | 1e-118 | FJ060522.2 Pinus taeda isolate 1589 anonymous locus 0_16808_01 genomic sequence. |
| GenBank | FJ060525 | 1e-118 | FJ060525.2 Pinus taeda isolate 1582 anonymous locus 0_16808_01 genomic sequence. |
| GenBank | JQ262163 | 1e-118 | JQ262163.1 Pinus radiata isolate 13474 hypothetical protein (0_16808_01) gene, partial cds. |
| Publications
? help Back to Top |
- Koh S, et al.
An oligopeptide transporter gene family in Arabidopsis.
Plant Physiol., 2002. 128(1): p. 21-9
[PMID:11788749] - Stacey MG,Koh S,Becker J,Stacey G
AtOPT3, a member of the oligopeptide transporter family, is essential for embryo development in Arabidopsis.
Plant Cell, 2002. 14(11): p. 2799-811
[PMID:12417702] - Wintz H, et al.
Expression profiles of Arabidopsis thaliana in mineral deficiencies reveal novel transporters involved in metal homeostasis.
J. Biol. Chem., 2003. 278(48): p. 47644-53
[PMID:13129917] - Stacey MG,Osawa H,Patel A,Gassmann W,Stacey G
Expression analyses of Arabidopsis oligopeptide transporters during seed germination, vegetative growth and reproduction.
Planta, 2006. 223(2): p. 291-305
[PMID:16151844] - Sugiura M,Georgescu MN,Takahashi M
A nitrite transporter associated with nitrite uptake by higher plant chloroplasts.
Plant Cell Physiol., 2007. 48(7): p. 1022-35
[PMID:17566055] - Stacey MG, et al.
The Arabidopsis AtOPT3 protein functions in metal homeostasis and movement of iron to developing seeds.
Plant Physiol., 2008. 146(2): p. 589-601
[PMID:18083798] - Zhai Z, et al.
OPT3 Is a Phloem-Specific Iron Transporter That Is Essential for Systemic Iron Signaling and Redistribution of Iron and Cadmium in Arabidopsis.
Plant Cell, 2014. 26(5): p. 2249-2264
[PMID:24867923] - Mendoza-Cózatl DG, et al.
OPT3 is a component of the iron-signaling network between leaves and roots and misregulation of OPT3 leads to an over-accumulation of cadmium in seeds.
Mol Plant, 2014. 7(9): p. 1455-1469
[PMID:24880337] - Khan MA, et al.
Changes in iron availability in Arabidopsis are rapidly sensed in the leaf vasculature and impaired sensing leads to opposite transcriptional programs in leaves and roots.
Plant Cell Environ., 2018. 41(10): p. 2263-2276
[PMID:29520929] - Steiner HY, et al.
An Arabidopsis peptide transporter is a member of a new class of membrane transport proteins.
Plant Cell, 1994. 6(9): p. 1289-99
[PMID:7919993] - Rentsch D,Hirner B,Schmelzer E,Frommer WB
Salt stress-induced proline transporters and salt stress-repressed broad specificity amino acid permeases identified by suppression of a yeast amino acid permease-targeting mutant.
Plant Cell, 1996. 8(8): p. 1437-46
[PMID:8776904]
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