 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PSME_00013164-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
| Family |
M-type_MADS |
| Protein Properties |
Length: 214aa MW: 23728.1 Da PI: 10.0627 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PSME_00013164-RA | genome | PRS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 90.4 | 8.9e-29 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien + rqvtfskRrng+lKKA+ELSvLCdaev ++ifs++g+lye++
PSME_00013164-RA 9 KRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVGLMIFSPRGNLYEFA 58
79***********************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 214 aa
Download sequence Send
to blast |
MVRGKTLMKR IENATSRQVT FSKRRNGLLK KAYELSVLCD AEVGLMIFSP RGNLYEFANP 60
SEAPLAWYSR VGPSQTARRV TAGNSADNLP ETGNRRNSSK LAATRRNREY SPELAVLTSE 120
CGVEFTAFAA AGGGVHGHRW DKQLHSPLHA LGAYLNPSLF YNLDSSIKGD LEVMRGVMIC 180
IEKMFLNPTI QDKINLQRDM YKAASGMFGF SSTQ
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT111301 | 8e-49 | BT111301.1 Picea glauca clone GQ03235_L08 mRNA sequence. |
| GenBank | HQ176521 | 8e-49 | HQ176521.1 Picea abies MADS-domain transcription factor dal3 variant 2 (DAL3) mRNA, complete cds, alternatively spliced. |
| GenBank | X79281 | 8e-49 | X79281.1 P.abies dal3 mRNA. |
