PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK27925.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 192aa MW: 21612.9 Da PI: 7.4132

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK27925.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	45.6	2.3e-14	40	84	84	128
NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+ v+s++++++g+kkt+vfykg+ap+g+kt+W m+eyr+ PK27925.2 40 KATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMNEYRA 84 89*****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	15.797	1	111	IPR003441	NAC domain
SuperFamily	SSF101941	6.15E-16	40	109	IPR003441	NAC domain
Pfam	PF02365	2.2E-5	43	83	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
SIQVSCVREI LSSGSSLHQD KKEKLEGVDP IVLQLPDIXK ATGSPSYVYS SDNRVIGVKK 60 TMVFYKGKAP TGRKTKWKMN EYRAIEEVNT SNNITTPTLR HEFSLCRVYI ISGSFRAFDR 120 RPTESTRVIQ EQQRDEAGPS NQNAAMIERA QSSSATSSSG ELVDNPMAGG SSTDWEMNQQ 180 PLWDLWEQFN WP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015872891.1	8e-65	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	4e-40	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2P5CWM2	9e-76	A0A2P5CWM2_PARAD; NAC domain containing protein
STRING	XP_010102010.1	2e-60	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	4e-42	NAC domain containing protein 61

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]