PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK23512.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 338aa    MW: 38184 Da    PI: 5.545
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK23512.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-18191241255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g++++eIrdps   k  r++lg+f ta eAa+a+++a+ kl+g
  PK23512.1 191 HYRGVRQRP-WGKFASEIRDPSR--KGSRVWLGTFNTAIEAAQAYDRAAFKLRG 241
                8********.**********854..34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.83E-31190249No hitNo description
Gene3DG3DSA:3.30.730.105.0E-32190250IPR001471AP2/ERF domain
PfamPF008471.2E-12191241IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-22191250IPR016177DNA-binding domain
SMARTSM003801.4E-37191255IPR001471AP2/ERF domain
PROSITE profilePS5103223.67191249IPR001471AP2/ERF domain
PRINTSPR003671.5E-13192203IPR001471AP2/ERF domain
PRINTSPR003671.5E-13231251IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAPINDVSKL EYIKQHLLGD LSPINGLSIF DQNELWSSEM NTDFSTSKSD SLCSKTSSSD  60
STIEIADYLN QNEVFEFSSN PNDFFDFELK PEILDLKTPK WAKSHTTLTS QSSIGSFEFE  120
SKPEIIDLGV STSESNSFSF KFESKPQIVR QTNRKPSLTI SLPAKTEIIQ FGAPKAQDSV  180
QVKSIEKEKK HYRGVRQRPW GKFASEIRDP SRKGSRVWLG TFNTAIEAAQ AYDRAAFKLR  240
GSKAILNFPL EAGNYKNSDV IDKKRRRQEE EVIEEVVVVK KEKLTEFDEA VNYLKNMPLT  300
PSDWSAVWES DGNGVYNMPL LSPLSPHPTL GYSQLMVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-31190250161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104815.11e-111ethylene-responsive transcription factor 5
TrEMBLA0A2P5CVM21e-149A0A2P5CVM2_TREOI; AP2/ERF transcription factor
STRINGXP_010104815.11e-110(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.18e-54ethylene responsive element binding factor 5