PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK23481.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 395aa    MW: 44547.5 Da    PI: 7.5878
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK23481.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.51.6e-5061411129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..... 95 
                lppGfrFhP+deelv++yL +k+++++ +l   + evd++k+ePwd+p+++  + kewyf+s+rd+kyatg r+nrat+sgyWkatgkd++++ k     
  PK23481.1   6 LPPGFRFHPRDEELVCDYLINKITQSDSTL---MIEVDLNKSEPWDIPERACVGGKEWYFYSQRDRKYATGLRTNRATASGYWKATGKDRPIFGKgkgvk 102
                79***********************99666...889************8777899***************************************976665 PP

        NAM  96 .....kgel..vglkktLvfykgrapkgektdWvmheyrle 129
                     +  +  vg++ktLvfy+grapkg+ktdWvmhe+rle
  PK23481.1 103 shsnnN--NglVGMRKTLVFYQGRAPKGKKTDWVMHEFRLE 141
                555444..066***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-583163IPR003441NAC domain
PROSITE profilePS5100555.3546163IPR003441NAC domain
PfamPF023651.2E-267140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MVESKLPPGF RFHPRDEELV CDYLINKITQ SDSTLMIEVD LNKSEPWDIP ERACVGGKEW  60
YFYSQRDRKY ATGLRTNRAT ASGYWKATGK DRPIFGKGKG VKSHSNNNNG LVGMRKTLVF  120
YQGRAPKGKK TDWVMHEFRL EGPLAPKLSS LKEDWVLCRV FYKSRNVSAT SAKPNYNMGL  180
AYYGEKSGSN SKSLPPLMDA YISFEKPTQK IHSSPEQYDY YNNYYNNNNN SGCNDHDNKA  240
HNNFHEQVPC FSNNNNNMIN LPQGSCYQTH DLIFKHNTTQ MEPNLGIRSS TSSNNNAHEA  300
TGRLGHHHGN VIPNMMDTST SSTSTIINNN HCLNPCSGVD QSGDNEVLRA VLDQITKIET  360
NPNLEESPLL SCGEGSSESY LSEVAMTMPN IWSHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-48116312165NO APICAL MERISTEM PROTEIN
1ut4_B4e-48116312165NO APICAL MERISTEM PROTEIN
1ut7_A4e-48116312165NO APICAL MERISTEM PROTEIN
1ut7_B4e-48116312165NO APICAL MERISTEM PROTEIN
4dul_A4e-48116312165NAC domain-containing protein 19
4dul_B4e-48116312165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294208.11e-122PREDICTED: NAC domain-containing protein 21/22-like isoform X1
RefseqXP_011460868.11e-122PREDICTED: NAC domain-containing protein 21/22-like isoform X2
TrEMBLA0A2P5FZK31e-167A0A2P5FZK3_TREOI; NAC domain containing protein
STRINGXP_004294208.11e-122(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100103241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.23e-89NAC domain containing protein 1