PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK22420.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MIKC_MADS
Protein Properties Length: 201aa    MW: 23342.8 Da    PI: 8.078
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK22420.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.11.1e-23955147
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
               k+ien+snr vt++kR++gi+KKA+E+ +LCd++v++ii+s +gk+ 
  PK22420.1  9 KKIENTSNRAVTYAKRKAGIFKKAKEIAILCDVKVSLIIVSGSGKMD 55
               68******************************************996 PP
2K-box59.21.7e-2071168199
      K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                y+k+s+++l+ ak+e+l++e++ +kke+en+  e+Rhl G+d++ L++ eL  +e++Le++l ++R++K+el+    ++l  ke+e+++   +L++k+e
  PK22420.1  71 YHKHSKEKLWPAKHENLHNEIEMVKKENENMVIELRHLNGQDIN-LNHYELIPIEEALENGLISVRARKSELVNILRQNLEAKEEEHKRLICELHQKME 168
                78999999***********************************6.9**************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.235161IPR002100Transcription factor, MADS-box
SMARTSM004328.0E-33160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.46E-29295IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-21323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-191054IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-213859IPR002100Transcription factor, MADS-box
PfamPF014862.2E-1083167IPR002487Transcription factor, K-box
PROSITE profilePS5129711.05684169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGRGKIEIKK IENTSNRAVT YAKRKAGIFK KAKEIAILCD VKVSLIIVSG SGKMDAMCSP  60
DNSLSTICEE YHKHSKEKLW PAKHENLHNE IEMVKKENEN MVIELRHLNG QDINLNHYEL  120
IPIEEALENG LISVRARKSE LVNILRQNLE AKEEEHKRLI CELHQKMEVV GDHGYHNHHH  180
HHDQRLNLRD YNNAHMPLAF R
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009358735.13e-71PREDICTED: floral homeotic protein PMADS 2
SwissprotQ074744e-67MADS2_PETHY; Floral homeotic protein PMADS 2
TrEMBLA0A2P5F1B32e-72A0A2P5F1B3_TREOI; MADS-box transcription factor
STRINGXP_009358735.11e-70(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-52MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]