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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK19717.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | TCP | ||||||||
Protein Properties | Length: 309aa MW: 34416.3 Da PI: 8.4787 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 136.5 | 2.3e-42 | 138 | 286 | 3 | 132 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaesssssasn 84 +kkdrhski+T++g+RdRRvRls+e+a++fFdL d+LGfdk+skt+eWLl ++k+aike ++++ sec PK19717.1 138 TKKDRHSKIYTAQGLRDRRVRLSIEIAREFFDLHDMLGFDKASKTLEWLLIKSKKAIKEESLArstpssycnnislsstttTTTTTSEC----------- 226 69*********************************************************888833444444444444433323333444........... PP TCP 85 sssg..............kaaksaa.kskksqksaasalnlakesrakarararertrekmri 132 + + +++ k+ + ++ +l+ +kesra ararar rt+ek + PK19717.1 227 ---EeaevneavvdpsshDPHEENLlVCTKNFDVEKLMLSNSKESRAMARARARARTKEKRSP 286 ...04444444444444455555555899999999999*********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-38 | 138 | 284 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.474 | 139 | 197 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.002 | 266 | 283 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MFSSINNNSP FPQYYFPSSS SSSSSYPPPP FPPPPLPLPF PPQQQEPNSS SSTVDTNNNN 60 NNLFYSQNHH FHDQIPLSTH PFFVSNTTIN NNNNNITPQI LIPAETFINL GVSNSPPNAM 120 VPASSNKVHQ EKLGKNGTKK DRHSKIYTAQ GLRDRRVRLS IEIAREFFDL HDMLGFDKAS 180 KTLEWLLIKS KKAIKEESLA RSTPSSYCNN ISLSSTTTTT TTTSECEEAE VNEAVVDPSS 240 HDPHEENLLV CTKNFDVEKL MLSNSKESRA MARARARART KEKRSPNLIL KKGPSLGVDD 300 HHHQSSSAV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 268 | 277 | RAMARARARA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P5F6U2 | 3e-57 | A0A2P5F6U2_TREOI; TCP transcription factor (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 4e-28 | TCP family protein |