PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK15505.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bHLH

Protein Properties

Length: 85aa MW: 9444.43 Da PI: 10.4082

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK15505.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.3	1.6e-14	22	66	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f+ Lr+llP+ +K +Ka++L +++Y++sL PK15505.2 22 HMISERKRREKLNESFQSLRSLLPPG-----TKKDKASVLNSTTDYLNSL 66 8899******************97.....8*************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.158	17	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.94E-13	17	71	No hit	No description
SuperFamily	SSF47459	9.42E-19	18	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-18	21	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-12	22	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-15	23	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
XAAAAGNTGT TCRPTTSTQL HHMISERKRR EKLNESFQSL RSLLPPGTKK DKASVLNSTT 60 DYLNSLKAQV EELSKRNKEL EAQVL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	30	ERKRRE
2	26	31	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094007.1	8e-32	putative transcription factor bHLH041
Refseq	XP_016506510.1	2e-32	PREDICTED: putative transcription factor bHLH041
Swissprot	Q9LTS4	5e-24	BH041_ARATH; Putative transcription factor bHLH041
TrEMBL	A0A2P5BDE2	1e-37	A0A2P5BDE2_PARAD; Basic helix-loop-helix transcription factor
STRING	XP_009624851.1	3e-31	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4150	33	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	2e-26	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]