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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK11261.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | TCP | ||||||||
Protein Properties | Length: 269aa MW: 28986.1 Da PI: 9.6554 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 123.7 | 2.1e-38 | 35 | 121 | 2 | 87 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+ ++++s+s+++ns s PK11261.4 35 APKRSSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALaTSGASVSEQGNSVS 121 789******************************************************************888644444444443332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.9E-33 | 40 | 255 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.389 | 41 | 95 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MAENKAAEIK DFQIVSSNKD DTNNNNNNNN KKQLAPKRSS NKDRHKKVDG RGRRIRMPAL 60 CAARVFQLTR ELGHKSDGET IQWLLQQAEP SIIAATGSGT IPASALATSG ASVSEQGNSV 120 SSGLHSKIDD LIPRGGNWTL MSGHLGRSHG VWPAITGIGS GFVHNSGQST SSFATENLNY 180 LPKFGIHGLE FPGMNLGSMS FPAIMGPGGG NQHVPGLELG LSQDGHIRVL NSQTLVQFQQ 240 QQQQQQQQQQ AEQRSGPENS VEKDDSQSR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015881712.1 | 1e-126 | transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 2e-66 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A2P5BSU7 | 1e-144 | A0A2P5BSU7_PARAD; TCP transcription factor | ||||
STRING | XP_006484165.1 | 1e-113 | (Citrus sinensis) | ||||
STRING | XP_006437974.1 | 1e-113 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3339 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 1e-65 | TCP family protein |