PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK05686.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 292aa MW: 33671.6 Da PI: 7.4978

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK05686.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	148.9	2.5e-46	17	142	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelv 100 pGfrFhPt+eel+++yLk+ v+gk ++ ++i +++iy ++Pw Lp+k+k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d++++s ++++ PK05686.1 17 PGFRFHPTEEELLDFYLKNMVSGKM-SF-DIIGSLNIYLFDPWVLPEKAKLGEREWYFFVPRDRKHGSGGRPNRTTERGFWKATGSDRRIVSLsePKRVI 114 9*******************998.44.89***********99999************************************997656778 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 gl+ktLvfykgrap+g+ktdWvm+eyrl PK05686.1 115 GLRKTLVFYKGRAPRGTKTDWVMNEYRL 142 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	54.057	15	160	IPR003441	NAC domain
SuperFamily	SSF101941	8.37E-54	15	160	IPR003441	NAC domain
Pfam	PF02365	2.7E-25	17	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0010200	Biological Process	response to chitin
GO:0045792	Biological Process	negative regulation of cell size
GO:0048281	Biological Process	inflorescence morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MAINSSMDPD VIPLDLPGFR FHPTEEELLD FYLKNMVSGK MSFDIIGSLN IYLFDPWVLP 60 EKAKLGEREW YFFVPRDRKH GSGGRPNRTT ERGFWKATGS DRRIVSLSEP KRVIGLRKTL 120 VFYKGRAPRG TKTDWVMNEY RLPDNCKLSK DIVLCKVYRK ATSLKVLEQR VQMEEEKNFQ 180 NEHNSPASPM DTFSFCSPHE ELIQFQPPLM AANDLVLKKE VEEVVGSATA VDNYNASFTT 240 ASLQVPYGYK LDKLPELQVP KLSLDWTQEQ FWTQLNSPWL QNMTPLANIL NL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	3e-48	17	163	22	171	NAC domain-containing protein 19
3swm_B	3e-48	17	163	22	171	NAC domain-containing protein 19
3swm_C	3e-48	17	163	22	171	NAC domain-containing protein 19
3swm_D	3e-48	17	163	22	171	NAC domain-containing protein 19
3swp_A	3e-48	17	163	22	171	NAC domain-containing protein 19
3swp_B	3e-48	17	163	22	171	NAC domain-containing protein 19
3swp_C	3e-48	17	163	22	171	NAC domain-containing protein 19
3swp_D	3e-48	17	163	22	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010103318.1	1e-143	NAC domain-containing protein 22
Swissprot	Q10S65	2e-92	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A2P5CKD5	1e-160	A0A2P5CKD5_TREOI; NAC domain containing protein
STRING	XP_010103318.1	1e-142	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6214	32	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-111	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]