PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003108G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 530aa    MW: 54935 Da    PI: 7.1352
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003108G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY58.21.6e-18250286237
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 
                       Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+
  PH01003108G0020 250 ADGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQ 286
                      7***************************99******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-20234286IPR003657WRKY domain
SuperFamilySSF1182901.06E-16242286IPR003657WRKY domain
PROSITE profilePS5081119.405244286IPR003657WRKY domain
SMARTSM007743.8E-14249311IPR003657WRKY domain
PfamPF031066.0E-16251286IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MEADDGAGGG AGRGRRSFVV DFFSDEKKNM KKSRVLAGAD AEDMKGPAAS GLAIKEEDLT  60
INLLPGSNTR SDRPDEDKNS GNTNEVAAMQ AELGRMNEEN QRLRGMLTQV TGSYQALQMH  120
LVALTQQKTQ MPPTQPQPPP THADGKTEGV IVPRQFLDLG PSGAGAEAAE EPSNSSTRVG  180
SPHRSSSTGN EDQERGDSPD GPSTAGWLPG RAMGQHLGAA ARDHDQQAQE ATMRKARVSV  240
RARSEAPIIA DGCQWRKYGQ KMAKGNPCPR AYYRCTMATG CPVRKQEYNR PQVPYRIGEG  300
ATVRRGPVHP DHHVRGHAQP PAAAGCDGDG VDHVGRGVHA ALVGSMPSAD GAGLMSSNFL  360
ARTVLPCSSS MATISASAPF PTVTLDLTHG PPGAPNAVPL SAARPPAPAQ FQLPLPGGGA  420
APAFAVPPQV LYNQSKFSGL QMSSDSADAV QFAQPRPPIG LPGPLADTVS AAAAAITADP  480
NFTVALAAAI TSIIGGQNAA GNSNANNNSN NNITSSTNTT GNNTNSETM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003108G0020
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU7262310.0KU726231.1 Phyllostachys edulis WAKY 1 protein (WRKY1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186071.10.0WRKY transcription factor 6-like
TrEMBLA0A140F5850.0A0A140F585_9POAL; WAKY 1 protein
STRINGMLOC_68299.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52653656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.18e-79WRKY family protein