PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002226G0100
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 877aa    MW: 98097.1 Da    PI: 6.8212
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002226G0100genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.4e-0977111339
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 
                       W+++E  ++++a +++G++ Wk++++ +g g+++ +
  PH01002226G0100  77 QWSKDELMRFYEAYRRHGKN-WKKVSAAVG-GKSADM 111
                      6*****************99.*********.*99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.59673124IPR017884SANT domain
SuperFamilySSF466894.11E-976121IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-477113IPR009057Homeodomain-like
PfamPF002492.3E-777112IPR001005SANT/Myb domain
CDDcd001678.58E-578112No hitNo description
SMARTSM011352.0E-35487588IPR033471DIRP domain
PfamPF065841.0E-29487587IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 877 aa     Download sequence    Send to blast
MPREEETSRK EDAEGRRGSI YLLDLELRAI SMGPAKGSRT ITKITIKGYE DGQHHEDPTS  60
SSKVKLKKRK MSDLGPQWSK DELMRFYEAY RRHGKNWKKV SAAVGGKSAD MVEALYSVHR  120
TFLSLPECEG TAMGFIALVT GHHNAVDEFP SHKEKLVRNI QSHPVGRRTP RVPVIVRADI  180
NATDDATPEI KNTVSSTKKA NEEINNDGTI FAMNGCSPDG SSGITDATKV VQGKTFLETK  240
GIGDTEISQT QQHLKKRRIE QSMDEGQTSK VEHETTTVAR GENNFADYQR LSEIFSPDEM  300
LVLDVLESLV TVPREVSQPK IPSGTLGKNK SALSHRREDG PSPVDQYKQG KQASECSASK  360
TRKKRRKKLL DEEVQAEEQN ISGNNLVLPE ARQVDTTERP PSLNSDSERG AIDLPESTAN  420
ISAEVCPDAP MEIKPEIDMS RSKRKSKIQC RTKYVSCNEG ADNLQARKLL HCLSSESLRR  480
WCTYEWFYSA VDYPWFMNNE FVNYLDFAKL SHLSRLTRSE WSTIRSSLGK PRRFSDNFLV  540
VEKEKLEDYR ENVRKYYAKL SDGSRDSLPA DLARPFSIGQ QVIVRHPSTR ELYDGKVVMM  600
EWDCYKVQFD RPDLGVGIVK DTDCMPVNWS DNLPDDLKKR ASLSNNAHGE LEIERIPKLT  660
PKESWDHTMN ELSISEPSKS LQITSDERLK VESTVDSARL PNKSTIGRCA PLHSLQSVDG  720
TVQSRGRSNN SSGHNDELDS YITAFVQTSL SQAKQMFGEV MQAISEDGND YREEETCTSN  780
QAANRKSPES EATLHDAQLP SNLISNCIAI ILSIKQLSES RYPPAKVAGV LERASSMLRP  840
SCSENVTVYN DIENCISVIK NQILALVPTS SGFAAV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361367RKKRRKK
2361368RKKRRKKL
3362366KKRRK
4362367KKRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002226G0100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314784.10.0protein ALWAYS EARLY 3 isoform X2
TrEMBLA0A0Q3QNV10.0A0A0Q3QNV1_BRADI; Uncharacterized protein
STRINGMLOC_36343.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-65DNA binding