PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001129G0100
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 535aa    MW: 57334.8 Da    PI: 8.3347
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001129G0100genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-11368411553
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                      h + ErrRR+r+N++fe Lr llP+       K +Ka++L k+ +Y++ 
  PH01001129G0100 368 HMISERRRRERLNESFEALRGLLPPG-----SKKDKATVLGKTLDYMNL 411
                      8899********************95.....599************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-16363431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.688363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-15367432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-9368411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-11369418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.50E-5378412No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MDTTLFVIGQ ESRLRILEQA AARVPGCAYL CVWAPIPGGQ PPPPSSFSAA AASAHLLCLD  60
AWLCDGGRGD DRVRALFDAY RGSLCAVVSG CVPGWAYKDG RAYMELPEND LAASASLPEQ  120
QQFYQEAGIK MDKSWQMAAF MGCGSGEIEV GMSAAAAANG ARMNLQASVE QVFSEDFFQQ  180
SLLEELLQLP PTRPSSSSSV ESTADCPTSL LRTMAMSSAT PSPRELTVSP LLHPRPPHPV  240
PFSRHGHGHI HFPSAEADDA AMAQAMLAVI SASSSSALPT PSTPPPGNRR SQRSPRRGST  300
TAFRAYNAAL APRAPQRPPG AHGQRMIKMG ISILRRMRTA SSAAQRGQEE EEEAATAPPA  360
PTSSQLHHMI SERRRRERLN ESFEALRGLL PPGSKKDKAT VLGKTLDYMN LLIAQISDLE  420
TKNRSLESQI HQRINGSSTS RTANEVQWLI SGSPERVQVQ VSSGAGASTS SSESRREVTI  480
RVVARAECDL SELVVRVIAL LKEMGRFTVV SVDARQPSSN NGTAQASLTL RATV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371376ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001129G0100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155039.10.0putative transcription factor bHLH041
TrEMBLA0A3B6PKM20.0A0A3B6PKM2_WHEAT; Uncharacterized protein
STRINGTraes_6AS_4D5775944.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.17e-15bHLH family protein